View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11618_low_4 (Length: 435)

Name: NF11618_low_4
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11618_low_4
NF11618_low_4
[»] chr2 (6 HSPs)
chr2 (1-417)||(26449093-26449509)
chr2 (329-417)||(31409688-31409776)
chr2 (342-417)||(22145641-22145716)
chr2 (371-417)||(4768478-4768524)
chr2 (343-417)||(38403355-38403429)
chr2 (379-412)||(1556305-1556338)
[»] chr5 (7 HSPs)
chr5 (5-412)||(16351779-16352197)
chr5 (5-266)||(4077995-4078250)
chr5 (269-417)||(40946710-40946858)
chr5 (343-417)||(4077838-4077912)
chr5 (365-413)||(33553604-33553652)
chr5 (388-417)||(30463750-30463779)
chr5 (376-412)||(40162224-40162260)
[»] chr8 (5 HSPs)
chr8 (281-420)||(26955409-26955548)
chr8 (330-417)||(38681137-38681224)
chr8 (330-408)||(38682400-38682477)
chr8 (290-417)||(8022724-8022852)
chr8 (345-421)||(29729350-29729425)
[»] chr7 (4 HSPs)
chr7 (172-266)||(18941120-18941214)
chr7 (345-413)||(1971096-1971164)
chr7 (343-418)||(24759473-24759548)
chr7 (375-417)||(13761781-13761823)
[»] chr6 (3 HSPs)
chr6 (269-413)||(23073361-23073505)
chr6 (371-414)||(8840653-8840696)
chr6 (290-417)||(18645950-18646078)
[»] chr3 (11 HSPs)
chr3 (172-266)||(44712346-44712439)
chr3 (329-417)||(29129130-29129218)
chr3 (295-417)||(44712492-44712615)
chr3 (329-412)||(53689246-53689329)
chr3 (343-417)||(52126885-52126959)
chr3 (345-417)||(45458495-45458566)
chr3 (307-417)||(43399450-43399560)
chr3 (372-417)||(19009679-19009724)
chr3 (380-417)||(49826488-49826525)
chr3 (288-356)||(45640632-45640700)
chr3 (269-357)||(51646944-51647032)
[»] chr1 (7 HSPs)
chr1 (329-417)||(29836239-29836327)
chr1 (345-418)||(40981594-40981667)
chr1 (329-417)||(6919550-6919638)
chr1 (375-419)||(50860116-50860160)
chr1 (329-417)||(50290433-50290521)
chr1 (377-419)||(10012000-10012042)
chr1 (388-417)||(39076265-39076294)
[»] chr4 (18 HSPs)
chr4 (329-417)||(14210403-14210491)
chr4 (329-417)||(14211372-14211460)
chr4 (329-417)||(14212323-14212411)
chr4 (329-417)||(14213292-14213380)
chr4 (329-417)||(14214260-14214348)
chr4 (329-417)||(14215229-14215317)
chr4 (329-417)||(14218100-14218188)
chr4 (329-417)||(14219070-14219158)
chr4 (329-417)||(14220039-14220127)
chr4 (329-417)||(14220990-14221078)
chr4 (329-417)||(14221959-14222047)
chr4 (371-417)||(14222970-14223016)
chr4 (329-417)||(14209452-14209540)
chr4 (329-417)||(14216198-14216286)
chr4 (329-417)||(14217149-14217237)
chr4 (377-414)||(37619004-37619041)
chr4 (388-417)||(1678492-1678521)
chr4 (388-417)||(14586881-14586910)
[»] scaffold0005 (1 HSPs)
scaffold0005 (388-417)||(230464-230493)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 26449509 - 26449093
Alignment:
Q  1 acatcaatggaggatagagttatgggggagagagaaagcggtacagagagagggcttacaggagtgagaaaattgtggtaaacaggaaggaaggaaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26449509 acatcaatggaggatagagttatgggggagagagaaagcggtacagagagagggcttacaggagtgagaaaattgtggtaaacaggaaggaaggaaagaa 26449410  T
Q  101 gaaattaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggtagtggaagatgagacgacggagggaggcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26449409 gaaattaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggtagtggaagatgagacgacggagggaggcat 26449310  T
Q  201 tggaaagagacttcggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgtgtattgaaagaaaatgtgtatttggaacagatga 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  26449309 tggaaagagacttaggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgtgtattgaaagaaaatgtttattgggaacagatga 26449210  T
Q  301 attgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctag 400  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||    
T  26449209 attgtgtggagatcaacttagatttatctaacggtcagaataatttggagccaaaaaattagaattagggtttggcaattagggtaagcatgtttgctag 26449110  T
Q  401 gattagatataaaggat 417  Q
    |||||||||||||||||    
T  26449109 gattagatataaaggat 26449093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 31409688 - 31409776
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| |||||||||||||||||||||| |||||||||||    
T  31409688 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattatatataaaggat 31409776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 22145641 - 22145716
Alignment:
Q  342 aatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    ||||||||| |||||| |||| |||||  || || |||||| ||||||||   |||||||||||||||||||||||    
T  22145641 aatttggagccaaaaacttaggattagggttaggaaattagggtaagcattactgctaggattagatataaaggat 22145716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 4768524 - 4768478
Alignment:
Q  371 tttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||    
T  4768524 tttgacaattaggataagcatgtttgctaagattagatataaaggat 4768478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 38403429 - 38403355
Alignment:
Q  343 atttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| ||||||||||| |||||  |||||||| ||| ||  ||||   |||||||||||||||||||||||    
T  38403429 atttggagccaaaaaattaggattagggtttggcaaatagggtttgcattgctgctaggattagatataaaggat 38403355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 1556338 - 1556305
Alignment:
Q  379 ttagagtaagcatgtttgctaggattagatataa 412  Q
    |||| |||||||||||||||||||||||||||||    
T  1556338 ttagggtaagcatgtttgctaggattagatataa 1556305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 16351779 - 16352197
Alignment:
Q  5 caatggaggatagagttatgggggagagagaaagcggtacagagagagggcttacaggagtgagaaaattgtggtaaacaggaaggaaggaaagaagaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||||    | ||||||    
T  16351779 caatggaggatagagttatgggggagagagaaagcggtacagagagag--cttacgtgagtgagaaaattgtggtaaacaggaaggaa----ataagaaa 16351872  T
Q  105 ttaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggtagtggaagatgagacgacggagggaggcaatgga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  16351873 ttaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggcagtggaagatgagacgacggagggaggcgatgga 16351972  T
Q  205 aagagacttcggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgt-gt----------------attgaaagaaaatgtgtat 287  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||                ||||||||||  ||| |||    
T  16351973 gagagagttcggtagtggtgggtgaatattggaaagtggaggagaatattggtgtgaagtgtagttaacttgtgacttaaaattgaaagaaggtgtttat 16352072  T
Q  288 ttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaa 387  Q
    | | || ||||| | |||| |||||||||  | |||| || |||||| || ||  |||||||| |||||||| || |||||  |||||||||||| ||||    
T  16352073 tggaaagagatggaatgtgcggagatcaaaatagattcatctaacggccataacgatttggagccaaaaaataaggattagggtttggcaattagggtaa 16352172  T
Q  388 gcatgtttgctaggattagatataa 412  Q
    |||||||||||||||||||||||||    
T  16352173 gcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 4078250 - 4077995
Alignment:
Q  5 caatggaggatagagttatgggggagagagaaagcggtacagagagagggcttacaggagtgagaaaattgtggtaaacaggaaggaaggaaagaagaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||||    | ||||||    
T  4078250 caatggaggatagagttatgggggagagagaaagcggtacagagagag--cttacgtgagtgagaaaattgtggtaaacaggaaggaa----ataagaaa 4078157  T
Q  105 ttaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggtagtggaagatgagacgacggagggaggcaatgga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4078156 ttaggctgaagacagggagttgtcttcggtggtgggccaagaggagggaggagatgtgccttcggtagtggaagatgagacgacggagggaggcaatgga 4078057  T
Q  205 aagagacttcggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgt 266  Q
     ||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||    
T  4078056 gagagagttcggtagtggtaggtgaatattggaaagtagaggagaatattggtgtgaagtgt 4077995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 417
Target Start/End: Complemental strand, 40946858 - 40946710
Alignment:
Q  269 attgaaagaaaatgtgtatttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattag 368  Q
    ||||||||||||||| |||| | || ||||| ||||||| ||||||||| | ||||||| |||||| |||||| |||||||| ||||||||||  |||||    
T  40946858 attgaaagaaaatgtttattggaaatagatggattgtgtagagatcaacatagatttatctaacggccagaatgatttggagccaaaaaattaagattag 40946759  T
Q  369 aatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
      |||||||||||| |||| |||||||||||||||||||||||||||||    
T  40946758 ggtttggcaattagggtaaacatgtttgctaggattagatataaaggat 40946710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 4077912 - 4077838
Alignment:
Q  343 atttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| |||||||| || |||||  ||||||||||||  |||||||||||||||||||||||||||||||||    
T  4077912 atttggagccaaaaaataaggattagggtttggcaattaggataagcatgtttgctaggattagatataaaggat 4077838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 33553652 - 33553604
Alignment:
Q  365 ttagaatttggcaattagagtaagcatgtttgctaggattagatataaa 413  Q
    |||| |||||||||||||  ||||||| |||||||||||||||||||||    
T  33553652 ttaggatttggcaattaggataagcatatttgctaggattagatataaa 33553604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 30463779 - 30463750
Alignment:
Q  388 gcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||||||||||||||||||||||    
T  30463779 gcatgtttgctaggattagatataaaggat 30463750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 40162260 - 40162224
Alignment:
Q  376 caattagagtaagcatgtttgctaggattagatataa 412  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  40162260 caattagggtaagcatgtttgttaggattagatataa 40162224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 281 - 420
Target Start/End: Complemental strand, 26955548 - 26955409
Alignment:
Q  281 tgtgtatttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaatt 380  Q
    |||||||| | || ||||| ||||||| ||||||||| | ||||||| ||||||||||||| |||||||||||||||||||  |||||  ||||||||||    
T  26955548 tgtgtattggaaatagatggattgtgtagagatcaacatagatttatctaacggtcagaatgatttggagtcaaaaaattaagattagggtttggcaatt 26955449  T
Q  381 agagtaagcatgtttgctaggattagatataaaggatgat 420  Q
    || |||| |||||||||||| |||||||||||||||||||    
T  26955448 agggtaaacatgtttgctagaattagatataaaggatgat 26955409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 38681224 - 38681137
Alignment:
Q  330 aacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    ||||| |||||  |||||||| ||||||||||| |||||  ||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  38681224 aacggccagaacgatttggagccaaaaaattaggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaaggat 38681137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 38682477 - 38682400
Alignment:
Q  330 aacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagat 408  Q
    ||||| |||||  |||||||| ||||||||||| |||||  ||| ||||| || |||||||||||||||||||||||||    
T  38682477 aacggccagaacgatttggagccaaaaaattaggattagggtttagcaat-agggtaagcatgtttgctaggattagat 38682400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 8022852 - 8022724
Alignment:
Q  290 ggaacagatga-attgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaag 388  Q
    ||||||||||| ||| | ||||||||||| | |||| || ||||||   ||| ||||||||| |||||| |||| |||||  || || |||||| ||||     
T  8022852 ggaacagatgatattatatggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattagggttaggaaattagggtaaa 8022753  T
Q  389 catgtttgctaggattagatataaaggat 417  Q
    |||   |||||||||||||||||||||||    
T  8022752 cattactgctaggattagatataaaggat 8022724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 29729350 - 29729425
Alignment:
Q  345 ttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggatgatg 421  Q
    |||||| |||||||||||  |||   |||||||||||| |||||||| || ||| |||||| |||||||||||||||    
T  29729350 ttggagccaaaaaattaggtttaaggtttggcaattagggtaagcatatt-gcttggattaaatataaaggatgatg 29729425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 18941120 - 18941214
Alignment:
Q  172 gtggaagatgagacgacggagggaggcaatggaaagagacttcggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgt 266  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18941120 gtggaagatgagacaacggagggaggcaatggagagagagttcggcagtggtgggtgaatattggaaagtggaggagaatattggtgtgaagtgt 18941214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 1971164 - 1971096
Alignment:
Q  345 ttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaa 413  Q
    |||||| ||||||| |||| ||||  ||||| |||||| ||||||||||||||||||||||||||||||    
T  1971164 ttggagccaaaaaagtagatttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 24759548 - 24759473
Alignment:
Q  343 atttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggatg 418  Q
    |||||||| |||||| |||| |||||  ||  | |||||| |||| ||||||||||||||||||||||||||||||    
T  24759548 atttggagccaaaaacttaggattagggttaagaaattagggtaaacatgtttgctaggattagatataaaggatg 24759473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 13761823 - 13761781
Alignment:
Q  375 gcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| ||  ||||||||||||||||||||||||||||||    
T  13761823 gcaattagggtttgcatgtttgctaggattagatataaaggat 13761781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 413
Target Start/End: Original strand, 23073361 - 23073505
Alignment:
Q  269 attgaaagaaaatgtgtatttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattag 368  Q
    ||||||||||| ||| ||||   |||||||| |||||||||||||| || | |||||||||||||| |||||  |||||||| ||||||||||| |||||    
T  23073361 attgaaagaaattgtttattgacaacagatggattgtgtggagatctacatagatttatttaacggccagaacgatttggagacaaaaaattaggattag 23073460  T
Q  369 aatttggcaattagagtaagcatgtttgctaggattagatataaa 413  Q
      |||| ||||||| |||||||||||||| |||||||||||||||    
T  23073461 ggtttgacaattagggtaagcatgtttgcaaggattagatataaa 23073505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 8840696 - 8840653
Alignment:
Q  371 tttggcaattagagtaagcatgtttgctaggattagatataaag 414  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  8840696 tttggcaattagggtaagcatgtttgctaggattagatataaag 8840653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 18646078 - 18645950
Alignment:
Q  290 ggaacagatga-attgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaag 388  Q
    ||||||||||| ||| | ||||||||||| | |||| || ||||||   ||| ||||||||| |||||| |||| |||||  ||  | |||||| ||||     
T  18646078 ggaacagatgatattatatggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattagggttaagaaattagggtaaa 18645979  T
Q  389 catgtttgctaggattagatataaaggat 417  Q
    |||   |||||||||||||||||||||||    
T  18645978 cattactgctaggattagatataaaggat 18645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 44712346 - 44712439
Alignment:
Q  172 gtggaagatgagacgacggagggaggcaatggaaagagacttcggtagtggtgggtgaatattggaaagtggaggagaatattggcgtgaagtgt 266  Q
    ||||||||||||||||||||||||||||||||| ||||| || | ||||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  44712346 gtggaagatgagacgacggagggaggcaatggagagagagtttg-tagtgctgggtgaatattggaaagtggaagagaatattggtgtgaagtgt 44712439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 29129218 - 29129130
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||||| |||  |||||| ||||||| |||  ||||  |||||||||||| |||| |||||||||||||||||||||||||||||    
T  29129218 taacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaaacatgtttgctaggattagatataaaggat 29129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 417
Target Start/End: Original strand, 44712492 - 44712615
Alignment:
Q  295 agatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaa-ttagaattagaatttggcaattagagtaagcatgt 393  Q
    ||||| ||||||||||||||||| | |||| || |||||   | ||| |||||||| ||||||| |||| |||| | ||||| ||||||  ||| |||||    
T  44712492 agatggattgtgtggagatcaacatggattcatctaacgactataatgatttggagccaaaaaaattaggattaaagtttggtaattaggataaacatgt 44712591  T
Q  394 ttgctaggattagatataaaggat 417  Q
    |||||||||||| |||||||||||    
T  44712592 ttgctaggattatatataaaggat 44712615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 53689329 - 53689246
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataa 412  Q
    |||||||||| |||  |||||| ||||||| |||  ||||  |||||||||||| |||||||||||||||||||||| ||||||    
T  53689329 taacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaagcatgtttgctaggattaaatataa 53689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 52126959 - 52126885
Alignment:
Q  343 atttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| |||||| |||| |||||  ||  | |||||| ||||||||||||||||||||||||||||||||||    
T  52126959 atttggagccaaaaacttaggattagggttaagaaattagggtaagcatgtttgctaggattagatataaaggat 52126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 45458495 - 45458566
Alignment:
Q  345 ttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||||||||| |||| ||| |  |||| |||||| |||||||||||| ||||||| |||||||||||||    
T  45458495 ttggagtcaaaaaagtagattta-aggttggaaattagggtaagcatgtttactaggatcagatataaaggat 45458566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 417
Target Start/End: Complemental strand, 43399560 - 43399450
Alignment:
Q  307 tggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattag 406  Q
    ||||||||||| | |||| || ||||||   ||| ||||||||| |||||| |||| ||||   || || |||||| ||||||||   ||||||||||||    
T  43399560 tggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattaaggttaggaaattagggtaagcattactgctaggattag 43399461  T
Q  407 atataaaggat 417  Q
    |||||||||||    
T  43399460 atataaaggat 43399450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 19009679 - 19009724
Alignment:
Q  372 ttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||| ||  || |||||||||||||||||||||||||||    
T  19009679 ttggcaattagggtttgcttgtttgctaggattagatataaaggat 19009724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 49826488 - 49826525
Alignment:
Q  380 tagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  49826488 tagagtaaacatgtttgttaggattagatataaaggat 49826525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 45640632 - 45640700
Alignment:
Q  288 ttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaa 356  Q
    |||||||| ||| |||||||||||||||||   |||| || ||||||||||||  |||||||| |||||    
T  45640632 ttggaacatatggattgtgtggagatcaacacagattcatctaacggtcagaactatttggagccaaaa 45640700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 51647032 - 51646944
Alignment:
Q  269 attgaaagaaaatgtgtatttggaacagatgaattgtgtggagatcaacttcgatttatttaacggtcagaataatttggagtcaaaaa 357  Q
    ||||||||| | ||| |||| |||||| ||| ||||||||||||||||    |||| || ||| |||||||||| ||||||| ||||||    
T  51647032 attgaaagacagtgtttattgggaacaaatggattgtgtggagatcaatacagattcatctaagggtcagaatagtttggagccaaaaa 51646944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 29836327 - 29836239
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||||| |||  |||||| ||||||| |||  ||||  |||||||||||| |||| |||||||||||||||||||||||||||||    
T  29836327 taacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaaacatgtttgctaggattagatataaaggat 29836239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 40981594 - 40981667
Alignment:
Q  345 ttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggatg 418  Q
    |||||| ||||||| |||  ||||  ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  40981594 ttggagccaaaaaagtaggtttagggtttggaaattagggtaagcatgtttgctaggattagatataaaggatg 40981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 6919638 - 6919550
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||||||||||  ||||| ||||||| |||  |||||  ||||||||||||||  ||||   |||||||||||||||||||||||    
T  6919638 taacggtcagaataaaatggagccaaaaaagtagggttagaggttggcaattagagtttgcattgctgctaggattagatataaaggat 6919550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 50860160 - 50860116
Alignment:
Q  375 gcaattagagtaagcatgtttgctaggattagatataaaggatga 419  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  50860160 gcaattagggtaagcacgtttgctaggattagatataaaggatga 50860116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 50290521 - 50290433
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | |||| |||||| ||||||| |||  ||||  ||||| | ||||  |||||||||||| ||||||||||||||||||||    
T  50290521 taacggtctggataaattggagccaaaaaaataggtttagggtttggaatttaggttaagcatgtttgttaggattagatataaaggat 50290433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 10012000 - 10012042
Alignment:
Q  377 aattagagtaagcatgtttgctaggattagatataaaggatga 419  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  10012000 aattagggtaagcatgtttgctaggattaaatataaaagatga 10012042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 39076265 - 39076294
Alignment:
Q  388 gcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||||||||||||||||||||||    
T  39076265 gcatgtttgctaggattagatataaaggat 39076294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14210403 - 14210491
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14210403 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14210491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14211372 - 14211460
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14211372 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14211460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14212323 - 14212411
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14212323 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14213292 - 14213380
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14213292 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14213380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14214260 - 14214348
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14214260 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14214348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14215229 - 14215317
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14215229 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14215317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14218100 - 14218188
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14218100 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14219070 - 14219158
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14219070 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14219158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14220039 - 14220127
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14220039 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14220127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14220990 - 14221078
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14220990 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14221078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14221959 - 14222047
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14221959 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14222047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 14222970 - 14223016
Alignment:
Q  371 tttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14222970 tttggaaattagggtaagcatgtttgctaggattagatataaaggat 14223016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14209452 - 14209540
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| |||||||||||||||| |||||||||||||||||    
T  14209452 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctacgattagatataaaggat 14209540  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14216198 - 14216286
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| |||||||||||||||||||||| |||||||||||    
T  14216198 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattatatataaaggat 14216286  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 14217149 - 14217237
Alignment:
Q  329 taacggtcagaataatttggagtcaaaaaattagaattagaatttggcaattagagtaagcatgtttgctaggattagatataaaggat 417  Q
    |||||||| | ||| ||||||| ||||||| |||  | ||  ||||| |||||| |||||||||||||||| |||||||||||||||||    
T  14217149 taacggtctggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctacgattagatataaaggat 14217237  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 37619004 - 37619041
Alignment:
Q  377 aattagagtaagcatgtttgctaggattagatataaag 414  Q
    |||||| |||||||||||||||||||||||||||||||    
T  37619004 aattagggtaagcatgtttgctaggattagatataaag 37619041  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 1678492 - 1678521
Alignment:
Q  388 gcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||||||||||||||||||||||    
T  1678492 gcatgtttgctaggattagatataaaggat 1678521  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 14586881 - 14586910
Alignment:
Q  388 gcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||||||||||||||||||||||    
T  14586881 gcatgtttgctaggattagatataaaggat 14586910  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 230493 - 230464
Alignment:
Q  388 gcatgtttgctaggattagatataaaggat 417  Q
    ||||||||||||||||||||||||||||||    
T  230493 gcatgtttgctaggattagatataaaggat 230464  T

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