View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_5 (Length: 429)
Name: NF11618_low_5
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 19577663 - 19578062
Alignment:
| Q |
18 |
atgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttatgannnnnnn-ggatttggatttggatttgaatgaaag |
116 |
Q |
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| T |
19577663 |
atgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttgtgattttttttggatttggatttggatttgaatgaaag |
19577762 |
T |
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| Q |
117 |
tgattaattcatgatgactttgacacgcggtgagggaggggatatggtgtggagggatgtatcgtaagggaatgggtgtgatcttggattga-------- |
208 |
Q |
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| T |
19577763 |
tgattaattcatgatgactttgacacgcggtgagggaggggatatggtgtggagggatgtatcgtaagggaatgggtgtgatcttggattgacatgactg |
19577862 |
T |
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| Q |
209 |
----ctattgactgactatggatcctgctcttcaaattttaactctctagattttagttagttgtttttcatttttctttgacaaagaattttagtctta |
304 |
Q |
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| T |
19577863 |
ttgactattgactgactatggatcgtgctcttcaaattttaactctctagattttagttagctgtttttcatttttctttgacaaagaattttagtcgta |
19577962 |
T |
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| Q |
305 |
gttattaaaaataataaaattaaatcaagctcttaaaattgaacccgtttannnnnnnggttcaccaaacatcgtagaagacaacaaaattattcaatat |
404 |
Q |
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| T |
19577963 |
gttattaaaaataataaaattaaatcaagctcttaaaattgaacccgttt---tttttggttcatcaaacatcgtagaagacaa-aaaattattcaatat |
19578058 |
T |
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