View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_6 (Length: 418)
Name: NF11618_low_6
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 156 - 412
Target Start/End: Original strand, 52109041 - 52109297
Alignment:
| Q |
156 |
tttggggatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgt |
255 |
Q |
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| T |
52109041 |
tttggggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgt |
52109140 |
T |
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| Q |
256 |
gaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgttcc |
355 |
Q |
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| T |
52109141 |
gaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgttcc |
52109240 |
T |
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| Q |
356 |
taaagaaattttgaggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
412 |
Q |
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| T |
52109241 |
taaagaaattttgaggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 52108914 - 52108760
Alignment:
| Q |
1 |
gggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgt |
100 |
Q |
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| T |
52108914 |
gggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgt |
52108815 |
T |
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| Q |
101 |
tgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttg |
155 |
Q |
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| T |
52108814 |
tgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttg |
52108760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 44520186 - 44520033
Alignment:
| Q |
1 |
gggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgt |
100 |
Q |
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| T |
44520186 |
gggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgt |
44520087 |
T |
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| Q |
101 |
tgagtttattcagaaattagggttaacgattgatgatataaatcagtatccttt |
154 |
Q |
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| T |
44520086 |
tgagtttattcagaaattagggttaacgattgatgatataaatcagtatccttt |
44520033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
217 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
304 |
Q |
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| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
161 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
212 |
Q |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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