View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_8 (Length: 358)
Name: NF11618_low_8
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 24657472 - 24657308
Alignment:
| Q |
36 |
aataataattgtaattacttaattaattaaacaaccggcaatattacctcttgcacgttgcttagtagtcttctaaagcttctatcaacgtgtaccatgc |
135 |
Q |
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| T |
24657472 |
aataataattgtaattacttaattaattaaacaaccggcaatattacctcttgcacgttgcttagt---cttttaaagcttctatcaacgtgtaccatgc |
24657376 |
T |
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| Q |
136 |
agtcataaaataaaatttaagctaaatatcatttttggtctttgaagttaaatgtttgtacgtgttag |
203 |
Q |
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| T |
24657375 |
agtcataaaataaaatttaagctaaatatcatttttgatctttgaagttaaatgtttatacgtgttag |
24657308 |
T |
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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 24657289 - 24657205
Alignment:
| Q |
270 |
tgaatcatgatcatattttcatcaaactcaagtaaaaagtatttatatgtggacatttaatattatgttcaaattcatctcactc |
354 |
Q |
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| T |
24657289 |
tgaatcatgatcatattttcatcaaactcaagtaaaaagtatttatatgtggatatttaatattatgttcaaattcatcgcactc |
24657205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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