View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_9 (Length: 354)
Name: NF11618_low_9
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 37079701 - 37079377
Alignment:
| Q |
13 |
atagggaaaaaagagagaacagtgcagtttagactggaaagaaagaatatgattgagnnnnnnnttctgatgagactgtatataaccttcacatcgtctc |
112 |
Q |
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| T |
37079701 |
atagggaaaaaagagagaacagtgcagtttagactggaaagaaagaatatgattgagaaaaaaattctgatgagactgtatataaccttcacatcgtctc |
37079602 |
T |
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| Q |
113 |
caattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactgcctttagcagccaaaaacctcctatcagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37079601 |
caattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactgcctttagcagccaaaaacctcctatcagc |
37079502 |
T |
|
| Q |
213 |
atctgtctgcagcacaccaatcagaaaaccaatactgaagttagcacttctagtcaaactaaagtcaattcctattaacttaacaatgtgacagctattt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37079501 |
atctgtctgcagcacaccaatcagaaaaccaatactgaagttagcacttctagtcaaactaaagtcaattcctattaacttaacaatgtgacagctattt |
37079402 |
T |
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| Q |
313 |
agcaatgttacctcataataatctg |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
37079401 |
agcaatgttacctcataataatctg |
37079377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 4492231 - 4492337
Alignment:
| Q |
114 |
aattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactgcctttagcagccaaaaacctcctatcagca |
213 |
Q |
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| T |
4492231 |
aattctagcattcgtgtcaataattgcccttttgatatgagaatttttgccaatgccaatcggaacactgcctttagcagccaaaaaccccctatcagca |
4492330 |
T |
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| Q |
214 |
tctgtct |
220 |
Q |
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||||||| |
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| T |
4492331 |
tctgtct |
4492337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 42465900 - 42465770
Alignment:
| Q |
91 |
tatataaccttcacatcgtctccaattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactgcctttag |
190 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| || || ||||||||||||| || ||||||||||||| |
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| T |
42465900 |
tatataaccttcacattttctccaattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggtacactgcctttag |
42465801 |
T |
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| Q |
191 |
cagccaaaaacctcctatcagcatctgtctg |
221 |
Q |
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|||||||||| || ||||||| |||||||| |
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| T |
42465800 |
cagccaaaaaacttttatcagcttctgtctg |
42465770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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