View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11619_high_14 (Length: 352)
Name: NF11619_high_14
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_high_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 53086780 - 53086428
Alignment:
| Q |
1 |
tgttatagggaacaacaatgttacaatttgttgctcttcataatacttattcaatttagcagttt-atatttcaattctgttttcagctcaactaactct |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53086780 |
tgttatagggagcaacaatgttacaatttgttgctcttcataatacttattcaatttagcagttttatatttcaattctgttttcagctcaactaactct |
53086681 |
T |
|
| Q |
100 |
tataattaactctgcttatggtttaatttaataaataaatatcagaatctagaatgagtatccaacaaatattagtcaacaatgtgacaaattatatatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53086680 |
tataattaactctgcttatggtttaatttaataaataaatatcagaatctagaatgagtatccaacaaatattagtcaacaatgttacaaattatatatt |
53086581 |
T |
|
| Q |
200 |
taatttctgctcacactttaaatgcttgcattcaattgaactgtctattgcagttaagtcaaagaaatgaaatcaataatgtcaacttgcacactagtag |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53086580 |
taatttctgctcacactttaaatgcttgcattcaattcaactgtctattgcagttaagtcaaagaaatgaaatcaataatgtcaacttgcacactagtag |
53086481 |
T |
|
| Q |
300 |
taaccttgaagcgtttccgagtcagagcaacactgttaatcttcctccacttc |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53086480 |
taacgttgaagcgtttccgagtcagagcaacactgttaatcttcctccacttc |
53086428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University