View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_high_16 (Length: 344)
Name: NF11619_high_16
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 6967904 - 6967593
Alignment:
| Q |
20 |
tctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatca |
119 |
Q |
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| T |
6967904 |
tctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatca |
6967805 |
T |
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| Q |
120 |
ccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggacaat |
219 |
Q |
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| T |
6967804 |
ccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggacaat |
6967705 |
T |
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| Q |
220 |
aactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgnnnnnnnnnnctcttctactttgtac |
319 |
Q |
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| T |
6967704 |
aactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgttttttttttctcttctactttgtac |
6967605 |
T |
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| Q |
320 |
tactttgtttct |
331 |
Q |
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|||||||||||| |
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| T |
6967604 |
tactttgtttct |
6967593 |
T |
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