View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11619_high_20 (Length: 301)

Name: NF11619_high_20
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11619_high_20
NF11619_high_20
[»] chr4 (6 HSPs)
chr4 (5-285)||(49542162-49542444)
chr4 (21-163)||(40918457-40918602)
chr4 (21-161)||(41783217-41783354)
chr4 (62-163)||(53729660-53729761)
chr4 (178-225)||(40918346-40918393)
chr4 (161-217)||(41783112-41783168)
[»] chr8 (5 HSPs)
chr8 (21-163)||(2882954-2883099)
chr8 (21-163)||(3151462-3151601)
chr8 (21-81)||(2873230-2873290)
chr8 (175-233)||(2883157-2883215)
chr8 (175-230)||(3151349-3151404)
[»] chr1 (1 HSPs)
chr1 (21-113)||(1086644-1086736)
[»] chr7 (1 HSPs)
chr7 (161-217)||(29250726-29250782)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 49542444 - 49542162
Alignment:
Q  5 tcctcctcgacaatgttttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcc--tcccgaggtatcagtatggtg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  49542444 tcctcctcgacaatgttttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcccctcccgaggtatcagtatggtg 49542345  T
Q  103 gcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaattttaattctttagatgtcgacaaagaggctcttatttcaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  49542344 gcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaattttaattcttcaaatgtcgacaaagaggctcttatttcaa 49542245  T
Q  203 acaacattactctaccctcctttaccgacgaatacactgctactcgcatgcacaaaatatataccggttcgtcccttcctttt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49542244 acaacattactctaccctcctttaccgacgaatacactgctactcgcatgcacaaaatatataccggttcgttccttcctttt 49542162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 40918602 - 40918457
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggt------atcagtatggtggcaccttgacag 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||   |||||| ||||      |||||||||||||||| |||||||    
T  40918602 tttctcgcaaggtttttactacgtttaaagtgcgtgggttctcatcatattcttct---cctcccaaggtttcagtatcagtatggtggcacattgacag 40918506  T
Q  115 ctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaatt 163  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40918505 ctgtcccgtgccctctgggtttagcttttccaaggtagcaccttcaatt 40918457  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 41783354 - 41783217
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcc 120  Q
    ||||||||||||||||||| ||  || ||||| ||  |||||||||||||||||||| ||||   ||||| |||||||||||||||||||||||||||      
T  41783354 tttctcgcaaggtttttaccagaattcaagtgggtcagttctcatcatcttcttcttttcct---gaggtttcagtatggtggcaccttgacagctgtgt 41783258  T
Q  121 cgtgccttctgggtttagcttttccaaggtagcaccttcaa 161  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  41783257 cgtgccttctgggattagctattcgaaggtagcaccttcaa 41783217  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 53729660 - 53729761
Alignment:
Q  62 tcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaa 161  Q
    |||||||| |||||||||  ||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||    
T  53729660 tcatcatcatcttcttcttttcctgaggtttcagtatggtggcaccttgacagctctcccgtgccttctggggttagctattcgaaggtagaaccttcaa 53729759  T
Q  162 tt 163  Q
    ||    
T  53729760 tt 53729761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 40918393 - 40918346
Alignment:
Q  178 gtcgacaaagaggctcttatttcaaacaacattactctaccctccttt 225  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  40918393 gtcgacaaagaggctcttaattcaaccaacattactctacactccttt 40918346  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 41783168 - 41783112
Alignment:
Q  161 attttaattctttagatgtcgacaaagaggctcttatttcaaacaacattactctac 217  Q
    ||||||||||||  || ||||||||||||||||||| ||||| |||| || ||||||    
T  41783168 attttaattcttctgaggtcgacaaagaggctcttaattcaaccaacttttctctac 41783112  T

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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 2882954 - 2883099
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcat---catcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctg 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2882954 tttctcgcaaggtttttactaggtttaaagggcgtgggttctcatcatcatcttcttcttctcctcccgaggtttcagtatggtggcaccttgacagctg 2883053  T
Q  118 tcccgtgccttctgggtttagcttttccaaggtagcaccttcaatt 163  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  2883054 tcccgtgccctcagggtttagcttttccaaggtagcaccttcaatt 2883099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 3151601 - 3151462
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcc 120  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  3151601 tttctcgcaaggtttttattaggtttaaagggcgtgggttctcatcatcttcttct---cctcccgaggtttcagtatggtggcaccttgacagctgtcc 3151505  T
Q  121 cgtgccttctgggtttagcttttccaaggtagcaccttcaatt 163  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  3151504 cgtgccctctgggtttagcttttccaaggtagcaccttcaatt 3151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 2873230 - 2873290
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcc 81  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||    
T  2873230 tttctcgcaaggtttttactaggtttaaagggtgtgggttctcatcatcatcttctcctcc 2873290  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 2883157 - 2883215
Alignment:
Q  175 gatgtcgacaaagaggctcttatttcaaacaacattactctaccctcctttaccgacga 233  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| |||||||    
T  2883157 gatgtcgacaaagaggcttttaattcaaccaacattactctacactccttttccgacga 2883215  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 3151404 - 3151349
Alignment:
Q  175 gatgtcgacaaagaggctcttatttcaaacaacattactctaccctcctttaccga 230  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| ||||    
T  3151404 gatgtcgacaaagaggcttttaattcaaccaacattactctacactccttttccga 3151349  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1086644 - 1086736
Alignment:
Q  21 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgaca 113  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||||    
T  1086644 tttctcgcaaggtttttactaggtttcaagtgtgtgggttctcatcatcttcatcttcttttccagtggtttcagtatggtggcaccttgaca 1086736  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 29250726 - 29250782
Alignment:
Q  161 attttaattctttagatgtcgacaaagaggctcttatttcaaacaacattactctac 217  Q
    ||||||||||||  || ||||||||||||||||||| |||||  |||||| ||||||    
T  29250726 attttaattcttctgaggtcgacaaagaggctcttaattcaacaaacatttctctac 29250782  T

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