View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_high_23 (Length: 271)
Name: NF11619_high_23
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4315469 - 4315215
Alignment:
| Q |
1 |
ctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315469 |
ctcctgaggttgttgacttgatccgtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
4315370 |
T |
|
| Q |
101 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315369 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcaaagatgctgtttattttgctgatgatcttctcgaccacatttct |
4315270 |
T |
|
| Q |
201 |
accaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttct |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315269 |
accaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttct |
4315215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4306607 - 4306397
Alignment:
| Q |
1 |
ctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| | || || |
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| T |
4306607 |
ctcctgaggttgttgacttgatccgtgggaagaaagttgacgtcaacttggttcaaaggttgaagaacactctttatgctgttgaagctgtgttgaacga |
4306508 |
T |
|
| Q |
101 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttct |
200 |
Q |
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| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
4306507 |
tgctgaacagaaacagctcaaagactctgctgttatcaaatggcttgatgatctcaaagatgctgtttattttactgatgatcttctcgaccacatctct |
4306408 |
T |
|
| Q |
201 |
accaaagctgc |
211 |
Q |
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||||||||||| |
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| T |
4306407 |
accaaagctgc |
4306397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4253031 - 4253265
Alignment:
| Q |
1 |
ctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
100 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| || |
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| T |
4253031 |
ctcctgaggttgttgtcttgatccgtgggaagaaagttgacgtcaatttggtccaaaggttgaagaacactctttatgctgtggaagctgtgtttaacga |
4253130 |
T |
|
| Q |
101 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttct |
200 |
Q |
| |
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| | || || |||||||||||| || ||||| |||||| |||| | |||||||||| || || ||| ||| | |||||||| ||||| ||| ||||||| |
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| T |
4253131 |
tgcggagcaaaaacagttcaaaaaccctgctattaacagatggatcgatgatctcaaaggtgttgtctatgtagctgatgaccttcttgacaacatttca |
4253230 |
T |
|
| Q |
201 |
accaaagctgctactcagaagaacaagcaggtgag |
235 |
Q |
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|||||||||||||| ||||| |||||||||||||| |
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| T |
4253231 |
accaaagctgctacacagaaaaacaagcaggtgag |
4253265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4309485 - 4309251
Alignment:
| Q |
1 |
ctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
100 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||| |||||| | |||||||| | ||||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
4309485 |
ctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactctttatgctgtggaagctgtgctgaatga |
4309386 |
T |
|
| Q |
101 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttct |
200 |
Q |
| |
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| || |||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||| ||| |||||||||| ||| |||||||||||| | |
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| T |
4309385 |
tgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgt |
4309286 |
T |
|
| Q |
201 |
accaaagctgctactcagaagaacaagcaggtgag |
235 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| |
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| T |
4309285 |
accaaagctgctactcggaagaacaaggaggtgag |
4309251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 4245988 - 4246070
Alignment:
| Q |
82 |
ttgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgct |
164 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| | | ||||||| |||| ||||||| |
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| T |
4245988 |
ttgaagctgtccttaatgatgctgaacagaaacaactcaaagactctgctgttaacaactagtttgatgacctcaaagatgct |
4246070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41932451 - 41932662
Alignment:
| Q |
1 |
ctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatga |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
41932451 |
ctcctgaggttattgacttgatacgtgggaagaaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtcttgaatga |
41932550 |
T |
|
| Q |
101 |
tactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttct |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||| || | || ||||| ||| |
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| T |
41932551 |
tgctgaacagaaacagttcaaagactctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatgacattttggatcacatctct |
41932650 |
T |
|
| Q |
201 |
accaaagctgct |
212 |
Q |
| |
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|| ||||||||| |
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| T |
41932651 |
actaaagctgct |
41932662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 34803473 - 34803278
Alignment:
| Q |
13 |
ttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatgatactgaacagaa |
112 |
Q |
| |
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|||| |||||| |||||||| | |||| ||||||||| | ||| |||||||||| |||| ||||| || |||||||| ||| ||||| | ||| |||| |
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| T |
34803473 |
ttgaattgatccgtgggaagcaggttgatgtcaatttggtacaacggttgaagaatactccatatgcagtagaagctgttctttatgatgcggaatagaa |
34803374 |
T |
|
| Q |
113 |
acagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatttctaccaaagc |
208 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| ||||| |||| ||| ||||||||| | |||||||| ||| | || ||||||||||| ||||| |
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| T |
34803373 |
acagatcaaagactctgctgttaacaactggctcgatgacctcaaagacgctgtttatgtagctgatgaccttttggatcacatttctactaaagc |
34803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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