View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_high_26 (Length: 255)
Name: NF11619_high_26
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 17591345 - 17591107
Alignment:
| Q |
1 |
attgcagctaacggataccgccctctggtgatgcctgaagatgttaaaattattctgtttgatgctggctgtattttttgctggtgcaggatggctaatt |
100 |
Q |
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| T |
17591345 |
attgcagctatcggataccgccctctggtgatgcctgaagatgttaaaattattctgtttgatgctgcctgta-tttttgctggtgcaggatggctaatt |
17591247 |
T |
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| Q |
101 |
tatgtaattgaagatgtaactgttatatgttgtttcttatnnnnnnnnnnnnnnnnctatcaattgaggtcaaatattgttttttgtctagtaacctagt |
200 |
Q |
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| T |
17591246 |
tatgtaattgaagatgtaactgttatatgttgtttcttat-aaaaaaaaaaaaaaactatcaattgaggtcaactattgttttttgtctagtaacctagt |
17591148 |
T |
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| Q |
201 |
ggctataacttacatatttaaatatgaagaagtgaggtatc |
241 |
Q |
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| T |
17591147 |
ggctataacttacatatttaaatgtgaagaagtgaggtatc |
17591107 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 35580007 - 35580065
Alignment:
| Q |
180 |
ttttttgtctagtaacctagtggctataacttacatatttaaatatgaagaagtgaggt |
238 |
Q |
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||||||||||||||||||||||| |||| || ||| | |||||| ||||||| |||||| |
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| T |
35580007 |
ttttttgtctagtaacctagtggttatagctcacacaattaaatgtgaagaaatgaggt |
35580065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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