View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_high_27 (Length: 252)
Name: NF11619_high_27
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 31427930 - 31428074
Alignment:
| Q |
105 |
aaaatggcgaatacaaacttatcttgcttgatactatgtttactacctctctttcttgtagccaaagcagagcaatgtgatagtcatgttgatggagctg |
204 |
Q |
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| T |
31427930 |
aaaatggcgaatacaaacttatcttgcttgatactatgtttactacctctctttcttgtagccaaagctgagcaatgtggtagtcaagctaatggagctc |
31428029 |
T |
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| Q |
205 |
tttgcccaaatgggatgtgttgcagcaaatttggttcttgtggca |
249 |
Q |
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| T |
31428030 |
tttgcccaaatgggctatgttgcagcaaatttggtttttgtggca |
31428074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 31432902 - 31433044
Alignment:
| Q |
107 |
aatggcgaatacaaacttatcttgcttgatactatgtttactacctctctttcttgtagccaaagcagagcaatgtgatagtcatgttgatggagctgtt |
206 |
Q |
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| T |
31432902 |
aatggcaagtacaaaattatcttgcttgatactatgtttgctacctctctttcttggatcaaaagcagaacaatgtggtagtcaagctaatagagctgtt |
31433001 |
T |
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| Q |
207 |
tgcccaaatgggatgtgttgcagcaaatttggttcttgtggca |
249 |
Q |
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| T |
31433002 |
tgtccaaatgggctatgttgtagcaaatttggttggtgtggca |
31433044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 31443818 - 31443951
Alignment:
| Q |
116 |
tacaaacttatcttgcttgatactatgtttactacctctctttcttgtagccaaagcagagcaatgtgatagtcatgttgatggagctgtttgcccaaat |
215 |
Q |
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|||||| ||||||||||||||||||||||||||| || ||||||||| | ||||||| ||||||||| ||| || | | ||||||||||||| | ||| |
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| T |
31443818 |
tacaaaattatcttgcttgatactatgtttactagctttctttcttggatccaaagctcagcaatgtggtagacaagctaatggagctgtttgtgcgaat |
31443917 |
T |
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| Q |
216 |
gggatgtgttgcagcaaatttggttcttgtggca |
249 |
Q |
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| T |
31443918 |
aggctatgttgcagccaatttggttattgtggca |
31443951 |
T |
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