View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11619_high_9 (Length: 464)

Name: NF11619_high_9
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11619_high_9
NF11619_high_9
[»] chr1 (3 HSPs)
chr1 (1-137)||(26597194-26597330)
chr1 (364-443)||(26597575-26597654)
chr1 (218-294)||(26597427-26597503)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26597194 - 26597330
Alignment:
Q  1 ggaagcagcatattaatgttctaaaagccaaatagagagactaatgtactctcacaaacactaatacacatacacatatactctaatacaatattgtagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26597194 ggaagcagcatattaatgttctaaaagccaaatagagagactaatgtactctcacaaacactaatacacatacacatatactctaatacaatattgtagt 26597293  T
Q  101 ataaacagacagaaagagagagaaagagagtttccta 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  26597294 ataaacagacagaaagagagagaaagagagtttccta 26597330  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 26597575 - 26597654
Alignment:
Q  364 aactatataccctagcctctcatatatacatgaaaaatggatgaccaccataacaatcatggtcatcatcaccatcacca 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26597575 aactatataccctagcctctcatatatacatgaaaaatggatgaccaccataacaatcatggtcatcatcaccatcacca 26597654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 26597427 - 26597503
Alignment:
Q  218 gacatgggaccataccattgtccttagcttcaaacttgagcctttttcctgcacgacaggatccgactctgccgctg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26597427 gacatgggaccataccattgtccttagcttcaaacttgagcctttttcctgcacgacaggatccgactctgccgctg 26597503  T

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