View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_10 (Length: 461)
Name: NF11619_low_10
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 39365126 - 39365584
Alignment:
| Q |
1 |
tttgatggccaaagattgaagattgagaaggatagtgataatggctaggatcactactatcataaccatgcttgtggtagttataagatgaggaaggttg |
100 |
Q |
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| T |
39365126 |
tttgatggccaaagattgaagattgagaaggatagtgataatggctaggatcactactatcataaccatgcttgtggtagttataagatgaggaaggttg |
39365225 |
T |
|
| Q |
101 |
tgaagcataatgagggatagggccattgcaaaggtgttgttgataatattgactttgagattctgttgtgtgaggaagctgccataactcagccctaagt |
200 |
Q |
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| T |
39365226 |
tgaagcataatgagggatagggccattgcaaaggtgttgttgataatattgactttgagattctgttgtgtgaggaagctgccataactcagccctaagt |
39365325 |
T |
|
| Q |
201 |
ccagtttttcgaaccctttttagaaccttcttctgatcagcaaaaccattcaccgtcaccttttgcaacttcatgtctatttcaatgtcatccacacctt |
300 |
Q |
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| T |
39365326 |
ccagtttttcgaaccctttttagaaccttcttctgatcagcaaaaccattcaccgtcaccttttgcaacttcatgtctatttcaatgtcatccacacctt |
39365425 |
T |
|
| Q |
301 |
taaatacatacaaaaaatcatatgatcactattaccttatgcttggaaggaagatgaaaatgtacaaaat---------aaggtacctttcattttctga |
391 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39365426 |
taaataaatacaaaaaatcatatgatcactattaccttatgcttggaaggaagatgaaaatgtacaaaataagcaaacgaaggtacctttcattttctga |
39365525 |
T |
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| Q |
392 |
agtgcagttttcactttgttttcacatccagggcaatccatgtgcaccctcatctctgt |
450 |
Q |
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| T |
39365526 |
agtgcagttttcactttgttttcacatccagggcaatccatgtgcaccctcatctctgt |
39365584 |
T |
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