View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_11 (Length: 422)
Name: NF11619_low_11
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 13211768 - 13212182
Alignment:
| Q |
1 |
tgttcattcaattttttgagcttgaatcacatccaaaagctccctcaaagggtgagggtgtccaactcggctcttataccatgaaagaattttgtcttgg |
100 |
Q |
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| T |
13211768 |
tgttcattaaattttttgagcttgaatcacatccaaaagctccctcaaagggtcagggtgtccaactcggctcttataccatgaaaggattttgtcttgg |
13211867 |
T |
|
| Q |
101 |
gtttaatttaaccttacaaaaccggcatgtaaggtgataattgcctccatttacaaacatgtgt--ttgccatttctcatccaatgtgagactcttcata |
198 |
Q |
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| T |
13211868 |
gtttaatttaaccttacaaaaccggcatgtaaggtgagaattgcctccacttgcaaacatatgtgcttgccatttctcatccaatgtgagactcttcata |
13211967 |
T |
|
| Q |
199 |
tatacattcctcatcaaagtagggactcttaacacatactctcgtacctaggactagacatccagagcgttatcagattgacccgatagcggaaacctaa |
298 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
13211968 |
tatacattcctcatcaaattagggactcttaacacatactctcgtacctagtactagatatccagagcgtaatcagattgatccgatagcggaaacctaa |
13212067 |
T |
|
| Q |
299 |
tagcaagtgtccaaacggatcatggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgtatcgtgatgat |
398 |
Q |
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| T |
13212068 |
tagcaagtgtccaaacggatcgtggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgtatcgtgatgat |
13212167 |
T |
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| Q |
399 |
tgcctacttataaac |
413 |
Q |
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| T |
13212168 |
tgcctacttataaac |
13212182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 31150992 - 31150945
Alignment:
| Q |
277 |
tgacccgatagcggaaacctaatagcaagtgtccaaacggatcatgga |
324 |
Q |
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| T |
31150992 |
tgacccgataacggaaacctaatagcaagtggcccaacggatcttgga |
31150945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 35018616 - 35018522
Alignment:
| Q |
284 |
atagcggaaacctaatagcaagtgtccaaacggatcatggatagactatgataagatcgtaaaatttg-gattggtcctaacttaaccttacaaa |
377 |
Q |
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| T |
35018616 |
atagcggaaaccttatagcaagtgacccaacggatcttggataggctctgatatcatcttagaatttgtggttgggcctaactcgaccttacaaa |
35018522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 37223665 - 37223629
Alignment:
| Q |
112 |
ccttacaaaaccggcatgtaaggtgataattgcctcc |
148 |
Q |
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| T |
37223665 |
ccttacaaaaccggcttgtaaggtgatgattgcctcc |
37223629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 40169055 - 40169091
Alignment:
| Q |
112 |
ccttacaaaaccggcatgtaaggtgataattgcctcc |
148 |
Q |
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| T |
40169055 |
ccttacaaaaccggcttgtaaggtgagaattgcctcc |
40169091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 40571669 - 40571598
Alignment:
| Q |
316 |
gatcatggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgta |
388 |
Q |
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| T |
40571669 |
gatcaaggatagactttgataccatcttaaa-tttggattgggcctaactcaaccttacaaaaccaacttgta |
40571598 |
T |
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