View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_12 (Length: 378)
Name: NF11619_low_12
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 36364844 - 36364669
Alignment:
| Q |
16 |
aagggaacaaaccgcctgaccacaccgatgtcaagaagactaagaactatgttttccctaattgctaaatcgtgtctcattcaaagccttcaaaacttaa |
115 |
Q |
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| T |
36364844 |
aagggaacaaaccgcctgaccacaccgatgtcaagaagactaagaactatgttttccctaattgctaaatcgtgtctcattcaaagccttcaattactaa |
36364745 |
T |
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| Q |
116 |
atcggtgatgatgaggatacatttttcacattccatttttctcagaatcaaccaaatgaattaaataaccaaattc |
191 |
Q |
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| T |
36364744 |
atcggtgatgatgaggatacatttttcacattccatttttctcagaatcaaccaaacgaattaaataaccaaattc |
36364669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 36364613 - 36364484
Alignment:
| Q |
244 |
agcactataaatagcatgtctacaacaa-cagtgtttttcatactacacaccaattaatagtataaactaagtagcaaagatgaatatcaagcccgttat |
342 |
Q |
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| T |
36364613 |
agcactataaatagcatgtctacaacaaacagtgtttttcatactacacaccaattaatagtataacctaagtagcaaagatgaatatcaagcccgttat |
36364514 |
T |
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| Q |
343 |
cttcttgtgcttcctctgcgcattacttct |
372 |
Q |
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| T |
36364513 |
cttcttgtgcttcctctgcgcattacttct |
36364484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 36391085 - 36390980
Alignment:
| Q |
86 |
cgtgtctcattcaaagccttcaaaacttaaatcggtgatgatgaggatacatttttcacattccatttttctcagaatcaaccaaatgaattaaataacc |
185 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| |||| |||| ||||| |||||| ||| | |
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| T |
36391085 |
cgtgtctcattcaaagccttcacttactcaatcggtgatgatgaggatacacttttcacattctatttgcctcacaatctgccaaacgaattatctaaac |
36390986 |
T |
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| Q |
186 |
aaattc |
191 |
Q |
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|||||| |
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| T |
36390985 |
aaattc |
36390980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 36390885 - 36390818
Alignment:
| Q |
305 |
ataaactaagtagcaaagatgaatatcaagcccgttatcttcttgtgcttcctctgcgcattacttct |
372 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||| || ||||||| |
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| T |
36390885 |
ataacctaagtagcaaagatgaatatcagacccgttatattcttgtgtttcctttgcacactacttct |
36390818 |
T |
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