View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_13 (Length: 374)
Name: NF11619_low_13
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 26437851 - 26437503
Alignment:
| Q |
5 |
tatcagatatgagaaagttgttgtaatttaaacgttgttcagttcagcgacgctctcaaacgcttccttcttatgagcatctcagtgattctttatctca |
104 |
Q |
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| T |
26437851 |
tatcagatgtgagaaagttgttgtaatttaaacgttgttcagttcagcgacgctctcaaacgcttccttcttatgagcatctcagtgattctttatctca |
26437752 |
T |
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| Q |
105 |
atgtttattctccctggctatctcttctctgtgttattagtagagaccgcttataaacagaatatcgattaatttgaactttccatttcattagatcaat |
204 |
Q |
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| T |
26437751 |
atgtttattctccctgactatctcttctctgtgttattag---agaccgcctataaacagaatatcaattaatttgaactttctatttcattagatcaat |
26437655 |
T |
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| Q |
205 |
aattaaacgacagcaatccaaacagaaaagactttgattcgatttgaaaccaaaactttttctaattcagttaagcttactcggttacaaaagcagacta |
304 |
Q |
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||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26437654 |
aattaaacggcagcaatcaacacagaaaagactttgattcgatttgaaaccaaaactttttctaattcagttaagcttactcagttacaaaagcagacta |
26437555 |
T |
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| Q |
305 |
tagattttgatgatgaataagttttcgggcttgatcttacatatgtacaagc |
356 |
Q |
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| T |
26437554 |
tagattttgatgatgaataagttttcgggcttgatcttatatatgtacaagc |
26437503 |
T |
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