View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_15 (Length: 348)
Name: NF11619_low_15
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 14020402 - 14020191
Alignment:
| Q |
9 |
agcagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgtgactt |
108 |
Q |
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| T |
14020402 |
agcagagaaatacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgtgactt |
14020305 |
T |
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| Q |
109 |
atagttcgttccttcgttgtctgtcattactatcaaaggttcgtctaaaactcaagtgcagacttcaggtaatgaatctaccgcatcaacattagaagcg |
208 |
Q |
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| T |
14020304 |
ctagttcattccttcgttgtctgtcgttactatcaaaggttcatctaaaactcaagtgcatacttcaggtaatgaatataccacaacaacatgagaatcg |
14020205 |
T |
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| Q |
209 |
ataaagacagccaa |
222 |
Q |
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| T |
14020204 |
acaaagacagccaa |
14020191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 13475720 - 13475905
Alignment:
| Q |
10 |
gcagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgtgactta |
109 |
Q |
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| T |
13475720 |
gcagagaaatacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatgcgacttc |
13475819 |
T |
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| Q |
110 |
tagttcgttccttcgttgtctgtcattactatcaaaggttcgtctaaaactcaagtgcagacttcaggtaatgaatctaccgcatc |
195 |
Q |
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| T |
13475820 |
tagttcgtttcttcgttgtctatcattactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaatctaccacatc |
13475905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 14108593 - 14108462
Alignment:
| Q |
11 |
cagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgtgacttat |
110 |
Q |
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| T |
14108593 |
cagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttctattaaaaggatacagacttcaggtaatgaaaatgcgacttct |
14108494 |
T |
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| Q |
111 |
agttcgttccttcgttgtctgtcattactatc |
142 |
Q |
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| T |
14108493 |
agttcgttacttcgttgtctgtcattactatc |
14108462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 13476233 - 13476285
Alignment:
| Q |
258 |
gtaatacatttttatcttcttccgtgatacatcttcaaagttcacagtcatct |
310 |
Q |
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| T |
13476233 |
gtaatacatttttatctttttccgtggtacatcttcaaagattactgtcatct |
13476285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 40816207 - 40816245
Alignment:
| Q |
40 |
gaaaattacactcacctcccataagttctattaaaatga |
78 |
Q |
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| T |
40816207 |
gaaaattgcactcacctcccctaagttctattaaaatga |
40816245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 24786909 - 24786856
Alignment:
| Q |
127 |
gtctgtcattactatcaaaggttcgtctaaaactcaagtgcagacttcaggtaa |
180 |
Q |
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| T |
24786909 |
gtctgtcattactatcaaatgttcatataaaacgcaagtgtagactgcaggtaa |
24786856 |
T |
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