View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_17 (Length: 342)
Name: NF11619_low_17
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 26049598 - 26049917
Alignment:
| Q |
1 |
tgattattgtaagttttagtagagaacaacacctataggctatagtactgttggtaagttttgcccttctgtgaaaacttgttgtcaagtaatgnnnnnn |
100 |
Q |
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| T |
26049598 |
tgattattgtaagttttagtagagaacaacacctataggctatagtactgttggcaagttttgccctactgtgaaaactggttgtcaagtaatgtttttt |
26049697 |
T |
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| Q |
101 |
ncttgatacccttgttttgtctcattttttatt--ctcctaatgaaaggaggataataagattaatatagaaaaagagagttggtgaagtgtggtgtttt |
198 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26049698 |
tcttgatacccttgttttgtctcatttttttttttctcctaatgaaagga---taataagattaatatagaaaaagagaattggtgaagtgtggtgtttt |
26049794 |
T |
|
| Q |
199 |
gaatggacacggatggaggattggactgaaaaggggactgtttatttgggtccctttgggataggatgaattgatgaggttgagctcgttacttgcagct |
298 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26049795 |
gaatggac--ggatggaggattggactgaaaaagggactgtttatttgggtccctttgggataggatgaattgatgaggttgagctcgttacttgcagct |
26049892 |
T |
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| Q |
299 |
atcaaaggcaggtacgacgagttgg |
323 |
Q |
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||||||||||||||||||||||||| |
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| T |
26049893 |
atcaaaggcaggtacgacgagttgg |
26049917 |
T |
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