View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_18 (Length: 332)
Name: NF11619_low_18
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 17591078 - 17590885
Alignment:
| Q |
1 |
attattgagctaagttcacgggagacggaggtcaaatattgttaattaacatataaagtgtattactattatttcgaatgagtgtattgtacttgggggt |
100 |
Q |
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| T |
17591078 |
attattgagctaagttcaccggggacggaggtcaaatactgttaattaacatataaagtgtattactattatttggaatgattgtattgtacttgggggt |
17590979 |
T |
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| Q |
101 |
tgttcggtcaaaaataaagtgtactacttaagacatctttaattttcnnnnnnnacctataagtaaataacattgattcatataaagtacgttg |
194 |
Q |
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| T |
17590978 |
tgttcggtcaaaaataaagtgtactacttaagacatctttaattttctttttttacctataagtaaataacattgattcatataaagtacgttg |
17590885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 17590829 - 17590759
Alignment:
| Q |
250 |
tcacaacatttatattagtatcataaaacggacaatacatatgtctaggaatatgtctatattcaagtctc |
320 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
17590829 |
tcacaacatttatattagtatcataaaacgtacaatacatatgtctaggcatatgtctatattcaagtctc |
17590759 |
T |
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