View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_2 (Length: 611)
Name: NF11619_low_2
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 383
Target Start/End: Complemental strand, 5923304 - 5922944
Alignment:
| Q |
23 |
cgtacgtac-atgttatgaaaagtttgtgcacaagctagctagactgtcttctaaagtggtactatagttgcnnnnnnnnnnnnnnnnnnnattctaatt |
121 |
Q |
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| T |
5923304 |
cgtacgtaccatgttatgaaaagtttgtgcacaagctagctagactgtcttctaaagtggtacgatagttgctttttggttttttaattttattctaatt |
5923205 |
T |
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| Q |
122 |
aagccgacatattataaataatgaaatgagcttgaatataaatcagaagaggacattatttgtgagtacaaaggttgcgaattacctaggttaattttgc |
221 |
Q |
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| T |
5923204 |
aagccgacatattataaataatgaaatgagcttgaatataaatcagaagaggacattttttgtgagtacaa-ggttgcgaattacctaggttaattttgc |
5923106 |
T |
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| Q |
222 |
atgtgtgttgtgagctcagtaatgcatgcatttgggattttggagtgaatcaaattagttaaaaagtgtacaaaatgcttcactgcttaagcttttttac |
321 |
Q |
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| T |
5923105 |
atgtgtgttgtgggctcagtaatgcatgcatttgggattttggagtgaatcaaattagttgaaaagtgtacaaaatgcttcactgcttaagcttttttac |
5923006 |
T |
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| Q |
322 |
tactgtaattcaaaatatatgataatcattcaattttaacctaatactaactcttccttata |
383 |
Q |
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| T |
5923005 |
tactgtaattcaaaatatatgataatcattaaattttaacttgatactaactcttccttata |
5922944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 398 - 599
Target Start/End: Complemental strand, 5922955 - 5922750
Alignment:
| Q |
398 |
ctcttccttataaaattta----taaaatgatgaacacttatccgttataagcatatttttaagattatatacgtttaatgtagacatatttttaagatt |
493 |
Q |
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| T |
5922955 |
ctcttccttataaaattaacttgtaaaatgatgaatacttatccgttataagcatatttttaagattatattcgtccaatgtaggcatatttttaagatt |
5922856 |
T |
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| Q |
494 |
attttacatactctctgagatctggtctctcacacaccactcttttacttccacaatactcactttctgttacaaacattaaggttcacttcacatgtcg |
593 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
5922855 |
attttacatactctctcagactcgatctctcacacaccactcttttacttccacaatactcactttctgttacaaacatcagggttcacttcacatgtcg |
5922756 |
T |
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| Q |
594 |
cctctc |
599 |
Q |
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|||||| |
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| T |
5922755 |
cctctc |
5922750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 561
Target Start/End: Complemental strand, 18790493 - 18790448
Alignment:
| Q |
516 |
tggtctctcacacaccactcttttacttccacaatactcactttct |
561 |
Q |
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| T |
18790493 |
tggtctctcacaaactactctttcacttccacaatactcattttct |
18790448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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