View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11619_low_21 (Length: 275)
Name: NF11619_low_21
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 38285870 - 38286131
Alignment:
| Q |
1 |
tgtgatagcgttttctag---tgaaggccaatttgtcttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattga |
97 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38285870 |
tgtgatagtgttttctagcagtgaaggccaatttgttttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattaa |
38285969 |
T |
|
| Q |
98 |
ttgcatagtatctgagattatttcaatgtgacttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtagttgcatatatttatt |
197 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38285970 |
ttgtatagtatctgagattatttgaatgtgacttttgatattttttatagtgaaattggaattttcttacatgtttaatatgtagttgcatatatttatt |
38286069 |
T |
|
| Q |
198 |
aaaggttactatttcattcattcatgtaaattatgcaggttattcaaacaaggcatatcatg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38286070 |
aaaggttactatttcattcattcatgtaaattatacaggttattcaaacaaggcatatcatg |
38286131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 14358794 - 14358560
Alignment:
| Q |
25 |
ccaatttgtcttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattgattgcatagtatctgagattatttcaat |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14358794 |
ccaatttgttttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattgattgcatgttatctgagattatttcaat |
14358695 |
T |
|
| Q |
125 |
gtgacttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtagttgcatatatttattaaaggttactatttcattcattcatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14358694 |
gtgacttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtagttgcatatatttattaaaggttactatttcattcattcatgt |
14358595 |
T |
|
| Q |
225 |
aaattatgcaggttattcaaacaaggcatatcatg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14358594 |
aaattatgcaggttattcaaacaaggcatgtcatg |
14358560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 28159595 - 28159830
Alignment:
| Q |
25 |
ccaatttgtcttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattgattgcatagtatctgagattatttcaat |
124 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28159595 |
ccaatttgttttcttctttgatttttgttgttgtgtgtttcatactttaatctcttaccaggttcataattgattgcatagtatctgagattatttcaat |
28159694 |
T |
|
| Q |
125 |
gtgacttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtagttgcatatatttatt-aaaggttactatttcattcattcatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28159695 |
gtgacttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtacttgcatatatttattaaaaggttactatttcattcattcatg |
28159794 |
T |
|
| Q |
224 |
taaattatgcaggttattcaaacaaggcatatcatg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28159795 |
taaattatgcaggttattcaaacaaggcatgtcatg |
28159830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University