View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_22 (Length: 274)
Name: NF11619_low_22
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 35183025 - 35183269
Alignment:
| Q |
19 |
acattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgc |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35183025 |
acattctcaataaaacaacttgcatcaaactgataagagactctatcgtataagacagaagcaagagttgtctttctgattccagccatcccccaaatgc |
35183124 |
T |
|
| Q |
119 |
ctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaa |
218 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35183125 |
ctatagctcgaaattcataatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaa |
35183224 |
T |
|
| Q |
219 |
gaatttatgacccattgtatttattacctcctgaacagtattctt |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35183225 |
gaatttatgacccattgtatttattacctcctgaacaatattctt |
35183269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 35177068 - 35177304
Alignment:
| Q |
19 |
acattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35177068 |
acattctcaataaaacagattgcatcaaactgataggagactctatcatacaagacggaagcaagagttgtctttccgattccagccatcccccaaatac |
35177167 |
T |
|
| Q |
119 |
ctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaa |
218 |
Q |
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||||| ||||| ||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
35177168 |
ctataaaacgaaagtcatcattgtctgagtttaatttcagaagactttctaattcttctactcgaggttgtatcccgataaggtcatcagcaaaccctga |
35177267 |
T |
|
| Q |
219 |
gaatttatgacccattgtatttattacctcctgaaca |
255 |
Q |
| |
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|||||||||||||| ||| |||||||||| ||||||| |
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| T |
35177268 |
gaatttatgacccaatgtttttattacctgctgaaca |
35177304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 35054191 - 35054432
Alignment:
| Q |
19 |
acattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgc |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| | |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35054191 |
acattctcaataaaacagcttgcatcaaattgagaggagattctatcatacaagacagacgcaagagttgtctttccgattccagccatcccccaaatac |
35054290 |
T |
|
| Q |
119 |
ctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaa |
218 |
Q |
| |
|
||| | |||||| ||||||||| | |||| |||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||| | |
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| T |
35054291 |
ctacaactcgaagttcatcatcatctgagcttaatttcaaaagactttctaattcttctacccgaggttgtgtcgcaataaggtcatcagcaaaccctga |
35054390 |
T |
|
| Q |
219 |
gaatttatgacccattgtatttattacctcctgaacagtatt |
260 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||| |||| |
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| T |
35054391 |
gaatttatgacccaatgtttttatcacctcctgaacaatatt |
35054432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 35105049 - 35105277
Alignment:
| Q |
27 |
aataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatagct |
126 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||| || |||| |||| ||||||||||||| | ||| ||||||||||||| || | | || |
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|
| T |
35105049 |
aataaaacaacgagcatcaaactgataagaaattctatcgtacaaaacagtagcatgagttgtctttcctactccgcccatcccccaaattcccagaact |
35105148 |
T |
|
| Q |
127 |
cgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaagaatttat |
226 |
Q |
| |
|
||||| ||||||| || |||| ||||| | ||| ||||||||| ||||| |||||||| ||||||| || |||| | |||||| ||||||||| |
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| T |
35105149 |
cgaaagtcatcattctctgagctcaattttagaagcttttctaattgttctatgcgaggttgcatcccaacgagatcattggtaaaccctgagaatttat |
35105248 |
T |
|
| Q |
227 |
gacccattgtatttattacctcctgaaca |
255 |
Q |
| |
|
|| || ||| |||||||| |||||||| |
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|
| T |
35105249 |
gattcaatgtttttattactgcctgaaca |
35105277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 35045210 - 35045379
Alignment:
| Q |
27 |
aataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatagct |
126 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||| || || || |||| |||| ||||||||||||| | |||| |||||||||| || || | | || |
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|
| T |
35045210 |
aataaaacaacgagcatcaaactgatatgagattctgtcatacaaaacagtagcatgagttgtctttcctactccacccatcccccatattcccagaact |
35045309 |
T |
|
| Q |
127 |
cgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaa |
196 |
Q |
| |
|
||||| |||||||||| | || ||||| | ||| ||||||||||||||| |||||||| ||||||| |
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|
| T |
35045310 |
cgaaagtcatcatcctctaagctcaattttagaagcttttctaattcttctatgcgaggttgcatcccaa |
35045379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 499314 - 499551
Alignment:
| Q |
18 |
aacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatg |
117 |
Q |
| |
|
||||||||||||||| |||| || | ||||||||| |||| | | || || ||||| | ||||||||||||| || |||||| ||||||||| || |
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|
| T |
499314 |
aacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccatcccccgtatt |
499413 |
T |
|
| Q |
118 |
cctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaacccca |
217 |
Q |
| |
|
|||| | | ||||| ||||||| ||| ||| |||||||| |||||||| ||||||| ||||||||||| ||||||||||||||| |||| || |
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|
| T |
499414 |
cctaaaacgcgaaagccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctg |
499513 |
T |
|
| Q |
218 |
agaatttatgacccattgtatttattacctcctgaaca |
255 |
Q |
| |
|
||||||||||||||| || ||||||||| || |||||| |
|
|
| T |
499514 |
agaatttatgacccagtgaatttattacttcttgaaca |
499551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 25638476 - 25638286
Alignment:
| Q |
42 |
atcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatagctcgaaattcatcatcc |
141 |
Q |
| |
|
|||||||||||| |||| ||| || || ||||||| |||||||| |||||||| |||||| |||||||||| || |||| | || |||| || ||| | |
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|
| T |
25638476 |
atcaaactgatatgagattctgtcatacaagacagttgcaagagtagtctttcctattccacccatcccccatattcctaaaacttgaaaaccaccattc |
25638377 |
T |
|
| Q |
142 |
tttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaagaatttatgaccca |
232 |
Q |
| |
|
||||| || ||| | | | || |||||| |||||| |||||||||| |||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
25638376 |
cttgagcttagttttagacgactctctaatgcttctataggaggttgtattccaataagatcatcagcagacctggagaatttatgaccca |
25638286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 25478164 - 25478231
Alignment:
| Q |
165 |
ttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaagaatttatgaccca |
232 |
Q |
| |
|
|||||||||||||||||||| |||||| || || |||||||||||||| || |||| |||||||||| |
|
|
| T |
25478164 |
ttctaattcttctactcgagtttgtattccgatcaggtcatcagcaaaacctgagaacttatgaccca |
25478231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 13609165 - 13609064
Alignment:
| Q |
78 |
agcaagagttgtctttccgattccagccatcccccaaatgcctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttct |
177 |
Q |
| |
|
|||||||||||||||||| ||||| |||| || ||||| |||| | |||||| ||||||| | |||||| || |||| |||| ||||||||||||| |
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|
| T |
13609165 |
agcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaa---catcatcatctgagtccaaattcagaaggttttctaattcttcc |
13609069 |
T |
|
| Q |
178 |
actcg |
182 |
Q |
| |
|
||||| |
|
|
| T |
13609068 |
actcg |
13609064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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