View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11619_low_24 (Length: 269)

Name: NF11619_low_24
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11619_low_24
NF11619_low_24
[»] chr3 (5 HSPs)
chr3 (10-249)||(38285389-38285628)
chr3 (211-241)||(8126201-8126231)
chr3 (194-247)||(20625272-20625325)
chr3 (215-247)||(14626703-14626735)
chr3 (209-241)||(21659207-21659239)
[»] chr4 (16 HSPs)
chr4 (174-247)||(37381088-37381158)
chr4 (158-209)||(53019132-53019183)
chr4 (174-247)||(38938074-38938146)
chr4 (209-241)||(16450228-16450260)
chr4 (158-209)||(30051339-30051390)
chr4 (158-209)||(55131629-55131680)
chr4 (209-247)||(33084786-33084824)
chr4 (209-247)||(42013179-42013217)
chr4 (214-248)||(50459382-50459416)
chr4 (209-242)||(49573917-49573950)
chr4 (210-242)||(11796623-11796655)
chr4 (215-247)||(17659540-17659572)
chr4 (211-247)||(24275288-24275324)
chr4 (209-241)||(30162680-30162712)
chr4 (209-241)||(53403030-53403062)
chr4 (209-241)||(55501241-55501273)
[»] chr7 (12 HSPs)
chr7 (157-247)||(33784093-33784183)
chr7 (209-247)||(46578298-46578336)
chr7 (211-247)||(5691547-5691583)
chr7 (209-247)||(24166296-24166334)
chr7 (209-247)||(39960307-39960345)
chr7 (158-211)||(35481878-35481931)
chr7 (211-247)||(3498327-3498363)
chr7 (174-206)||(9503992-9504024)
chr7 (209-237)||(24733184-24733212)
chr7 (209-241)||(27234927-27234959)
chr7 (211-247)||(27942396-27942432)
chr7 (211-247)||(46221111-46221147)
[»] chr2 (9 HSPs)
chr2 (177-247)||(31211750-31211820)
chr2 (209-247)||(4637076-4637114)
chr2 (210-247)||(19822411-19822448)
chr2 (210-247)||(19842632-19842669)
chr2 (209-241)||(10099621-10099653)
chr2 (211-247)||(27743687-27743723)
chr2 (211-247)||(29712520-29712556)
chr2 (211-247)||(30905195-30905231)
chr2 (211-247)||(38179027-38179063)
[»] chr8 (4 HSPs)
chr8 (184-241)||(10150908-10150965)
chr8 (209-246)||(13832077-13832114)
chr8 (209-242)||(44838843-44838876)
chr8 (211-247)||(42631812-42631848)
[»] chr1 (9 HSPs)
chr1 (158-207)||(47293368-47293417)
chr1 (158-199)||(47991880-47991921)
chr1 (211-247)||(15055026-15055062)
chr1 (183-238)||(33324088-33324143)
chr1 (193-247)||(34332981-34333035)
chr1 (210-247)||(36164027-36164064)
chr1 (209-241)||(21852476-21852508)
chr1 (209-241)||(24478704-24478736)
chr1 (209-241)||(31481904-31481936)
[»] chr5 (7 HSPs)
chr5 (209-247)||(30489165-30489203)
chr5 (151-209)||(22584325-22584383)
chr5 (174-207)||(25596509-25596542)
chr5 (209-241)||(15966682-15966714)
chr5 (209-241)||(36329119-36329151)
chr5 (211-247)||(36346866-36346902)
chr5 (211-247)||(40208548-40208584)
[»] scaffold0531 (1 HSPs)
scaffold0531 (158-209)||(7002-7053)
[»] chr6 (1 HSPs)
chr6 (209-247)||(28737860-28737898)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 38285628 - 38285389
Alignment:
Q  10 tgataatgttgagaagcatagtagagtctaattatagaaaaataaactaaatgaaaaatgaactttataagtttagtggtcataactaaacttacgacat 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38285628 tgatcatgttgagaagcatagtagagtctaattatagaaaaataaattaaatgaaaaatgaactttataagtttagtgatcataactaaacttacgacat 38285529  T
Q  110 aatgtaccaaccc-nnnnnnnnnactaaatttagcaaccaacttgtaactactccatctgttataaattataggcaaatttaactttttagattcattca 208  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  38285528 aatgtaccaacccatttttttttactaaatttagcaaccaacttgtaactactccatctgttataaattatgggcaaatttaacatttta-attcattca 38285430  T
Q  209 aatataaaccacatatatcattaattgaatgaatttaaatt 249  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  38285429 aatataaaccacatatattattaattgaatgaatttaaatt 38285389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 8126201 - 8126231
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaa 241  Q
    |||||||||||||||||||||||||||||||    
T  8126201 tataaaccacatatatcattaattgaatgaa 8126231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 20625325 - 20625272
Alignment:
Q  194 ttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||| ||||||||| ||||||||||||| |||||| | | ||||||||||||    
T  20625325 ttttaggttcattcaattataaaccacatacatcatttaataaatgaatttaaa 20625272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 14626703 - 14626735
Alignment:
Q  215 aaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||| |||||||||||||||||||||||    
T  14626703 aaccacatacatcattaattgaatgaatttaaa 14626735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 21659207 - 21659239
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    |||||| ||||||||||||||||||||||||||    
T  21659207 aatatagaccacatatatcattaattgaatgaa 21659239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 37381088 - 37381158
Alignment:
Q  174 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||| |||||||| |||||||||||||||   ||||||||||||||||||||||||||||| |||| ||||    
T  37381088 aattataagcaaattttactttttagattcat---aatataaaccacatatatcattaattgaacgaatctaaa 37381158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 53019132 - 53019183
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 209  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  53019132 tactccatctgttattaattataagcaaatttaactttttagattcactcaa 53019183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 38938146 - 38938074
Alignment:
Q  174 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||| |||||||| |||||| |||||||||||| ||| ||||||||| || ||||||||||||||| ||||    
T  38938146 aattataagcaaatttgactttt-agattcattcaattatgaaccacatacattattaattgaatgaatctaaa 38938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 16450228 - 16450260
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    |||||||||||||||||||||||||||||||||    
T  16450228 aatataaaccacatatatcattaattgaatgaa 16450260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 30051339 - 30051390
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 209  Q
    ||||||||| ||| |||| |||| |||||||||||||||||| |||||||||    
T  30051339 tactccatccgttttaaaatataagcaaatttaactttttaggttcattcaa 30051390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 55131680 - 55131629
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 209  Q
    ||||||||| ||| | ||||||| |||||||||||||||||| |||||||||    
T  55131680 tactccatccgttgttaattataagcaaatttaactttttaggttcattcaa 55131629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 33084786 - 33084824
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33084786 aatatgaaccagatatatcattaattgaatgaatttaaa 33084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 42013217 - 42013179
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42013217 aatatagaccacatacatcattaattgaatgaatttaaa 42013179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 50459416 - 50459382
Alignment:
Q  214 aaaccacatatatcattaattgaatgaatttaaat 248  Q
    ||||||||||||||||||||| |||||||||||||    
T  50459416 aaaccacatatatcattaattaaatgaatttaaat 50459382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 49573950 - 49573917
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaat 242  Q
    ||||||||||||||| ||||||||||||||||||    
T  49573950 aatataaaccacatacatcattaattgaatgaat 49573917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 11796655 - 11796623
Alignment:
Q  210 atataaaccacatatatcattaattgaatgaat 242  Q
    ||||||||||||||||||||| |||||||||||    
T  11796655 atataaaccacatatatcattcattgaatgaat 11796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 17659540 - 17659572
Alignment:
Q  215 aaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||||||||||||||||||||||||| ||||    
T  17659540 aaccacatatatcattaattgaatgaatctaaa 17659572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 24275288 - 24275324
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||| |||||||| |||||||||||||||||||||||    
T  24275288 tatagaccacatacatcattaattgaatgaatttaaa 24275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 30162680 - 30162712
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||| |||||||||||||||||||||||||||    
T  30162680 aatatgaaccacatatatcattaattgaatgaa 30162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 53403062 - 53403030
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||||||||||||| |||||||||||||||||    
T  53403062 aatataaaccacatacatcattaattgaatgaa 53403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 55501273 - 55501241
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||||||||||||| |||||||||||||||||    
T  55501273 aatataaaccacatacatcattaattgaatgaa 55501241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 33784183 - 33784093
Alignment:
Q  157 ctactccatctgttataaattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||||  ||| |||| |||||||| ||||||||  ||| ||||| |||  |||||||| |||||||||||||||||||||||    
T  33784183 ctactccatctgtttcaaaatataagcaaattttactttttaagttcgttcaattatggaccacatacatcattaattgaatgaatttaaa 33784093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 46578336 - 46578298
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  46578336 aatataaaccacatacatcattaattgaatgaatttaaa 46578298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 5691547 - 5691583
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5691547 tataaaccacatacatcattaattgaatgaatttaaa 5691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 24166334 - 24166296
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24166334 aatatgaaccacatatatcattaattgaatgaacttaaa 24166296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 39960307 - 39960345
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  39960307 aataaaaactacatatatcattaattgaatgaatttaaa 39960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 35481931 - 35481878
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattcaaat 211  Q
    |||||||||| | |||||||||| |||||||| | |||||||||||||| ||||    
T  35481931 tactccatctatcataaattataagcaaatttgattttttagattcatttaaat 35481878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 3498363 - 3498327
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  3498363 tataaaccacatacatcattaattgaatgaatctaaa 3498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 9504024 - 9503992
Alignment:
Q  174 aattataggcaaatttaactttttagattcatt 206  Q
    ||||||| |||||||||||||||||||||||||    
T  9504024 aattataagcaaatttaactttttagattcatt 9503992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 24733184 - 24733212
Alignment:
Q  209 aatataaaccacatatatcattaattgaa 237  Q
    |||||||||||||||||||||||||||||    
T  24733184 aatataaaccacatatatcattaattgaa 24733212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 27234927 - 27234959
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||| |||||||||||||||||||||||||||    
T  27234927 aatatgaaccacatatatcattaattgaatgaa 27234959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 27942396 - 27942432
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27942396 tataaaccacatacatcattaattgaatgaacttaaa 27942432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 46221147 - 46221111
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  46221147 tataaaccacatacatcattaattgaatgaacttaaa 46221111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 31211750 - 31211820
Alignment:
Q  177 tataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| ||||    
T  31211750 tataagcaaattttactttttagattcattcaattatgaaccacatacatcattaatggaatgaatctaaa 31211820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 4637076 - 4637114
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  4637076 aatataaaccacatacatcattaattgaatgaatctaaa 4637114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 19822448 - 19822411
Alignment:
Q  210 atataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19822448 atataaaccacatatatcattgattgaatgaacttaaa 19822411  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 19842669 - 19842632
Alignment:
Q  210 atataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19842669 atataaaccacatatatcattgattgaatgaacttaaa 19842632  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 10099621 - 10099653
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    |||||| ||||||||||||||||||||||||||    
T  10099621 aatatagaccacatatatcattaattgaatgaa 10099653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 27743687 - 27743723
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  27743687 tataaaccacatacatcattaattgaatgaatctaaa 27743723  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 29712556 - 29712520
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29712556 tataaaccacatacatcattaattgaatgaacttaaa 29712520  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 30905195 - 30905231
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  30905195 tataaaccacatacatcattaattgaatgaacttaaa 30905231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 38179063 - 38179027
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||||||||||||||||| | ||||||||||||||    
T  38179063 tataaaccacatatatcatttagtgaatgaatttaaa 38179027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 10150965 - 10150908
Alignment:
Q  184 aaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaa 241  Q
    |||||| ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||    
T  10150965 aaatttgactttttaggttcattcaattatgaaccacatacatcattaattgaatgaa 10150908  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 13832077 - 13832114
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaa 246  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13832077 aatatgaaccacatatatcattaattgaatgaatttaa 13832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 44838843 - 44838876
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaat 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  44838843 aatatgaaccacatatatcattaattgaatgaat 44838876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 42631848 - 42631812
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42631848 tataaaccacatacatcattaattgaatgaatctaaa 42631812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 47293417 - 47293368
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattc 207  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  47293417 tactccatctgttgtcaattataagcaaatttaactttttagattcattc 47293368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 47991921 - 47991880
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttag 199  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  47991921 tactccatctgttatgaattataagcaaatttaactttttag 47991880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 15055026 - 15055062
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15055026 tataaaccacatatatcattaattgaatgaatctaaa 15055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 33324088 - 33324143
Alignment:
Q  183 caaatttaactttttagattcattcaaatataaaccacatatatcattaattgaat 238  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||| || |||||||||||    
T  33324088 caaatttcactttttaggttcattcaattatgaaccacatacattattaattgaat 33324143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 34333035 - 34332981
Alignment:
Q  193 tttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||| || ||| |||||| ||||||||| ||||||||||||||||| |||||    
T  34333035 tttttaggttaatttaaatatgaaccacatacatcattaattgaatgaacttaaa 34332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 36164027 - 36164064
Alignment:
Q  210 atataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  36164027 atatataccacatatatcatttattgaatgaatttaaa 36164064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 21852508 - 21852476
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||| |||||||||||||||||||||||||||    
T  21852508 aatatgaaccacatatatcattaattgaatgaa 21852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 24478736 - 24478704
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    |||||| ||||||||||||||||||||||||||    
T  24478736 aatatagaccacatatatcattaattgaatgaa 24478704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 31481936 - 31481904
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    |||||||||||||||||||||||| ||||||||    
T  31481936 aatataaaccacatatatcattaaatgaatgaa 31481904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 30489165 - 30489203
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30489165 aatatagaccacatatatcattaattgaatgaatttaaa 30489203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 22584383 - 22584325
Alignment:
Q  151 ttgtaactactccatctgttataaattataggcaaatttaactttttagattcattcaa 209  Q
    |||||| ||||||||||||| | || |||| |||||||| ||||||||| |||||||||    
T  22584383 ttgtaaatactccatctgtttttaaatataagcaaattttactttttaggttcattcaa 22584325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 25596542 - 25596509
Alignment:
Q  174 aattataggcaaatttaactttttagattcattc 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  25596542 aattataagcaaatttaactttttagattcattc 25596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 15966714 - 15966682
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||||||||||||| |||||||||||||||||    
T  15966714 aatataaaccacatacatcattaattgaatgaa 15966682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 36329151 - 36329119
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaa 241  Q
    ||||| |||||||||||||||||||||||||||    
T  36329151 aatatgaaccacatatatcattaattgaatgaa 36329119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 36346866 - 36346902
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  36346866 tataaaccacatacatcattaattgaatgaacttaaa 36346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 40208548 - 40208584
Alignment:
Q  211 tataaaccacatatatcattaattgaatgaatttaaa 247  Q
    |||||||||||||||||||||||||||| || |||||    
T  40208548 tataaaccacatatatcattaattgaataaacttaaa 40208584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 7002 - 7053
Alignment:
Q  158 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 209  Q
    ||||||||| ||||  ||||||| |||||||| |||||||||||||||||||    
T  7002 tactccatccgttactaattataagcaaatttgactttttagattcattcaa 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 28737898 - 28737860
Alignment:
Q  209 aatataaaccacatatatcattaattgaatgaatttaaa 247  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  28737898 aatatgaaccacatacatcattaattgaatgaatttaaa 28737860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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