View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_3 (Length: 577)
Name: NF11619_low_3
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 2 - 562
Target Start/End: Original strand, 12752426 - 12752986
Alignment:
| Q |
2 |
cagagttaaatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaannnnnnnagttgggaggagttaaggcattgaaaacatcat |
101 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12752426 |
cagagttacatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaagggggagagttgggaggagttaaggcattgaaaacatcat |
12752525 |
T |
|
| Q |
102 |
tctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaactcccaccaggctttgcaatgccagtcgggct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752526 |
tctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaactcccaccaggctttgcaatgccagtcgggct |
12752625 |
T |
|
| Q |
202 |
ggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctgatttaatggcccagcaggaaattgtttgcggcaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12752626 |
ggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctgatttgatggcccagcaggaaattgtttgcggcaa |
12752725 |
T |
|
| Q |
302 |
ggagaagcatcaataacatcatcattttcaggaaacttgcgactttgttgacaagaataatcagacttctcagaannnnnnnnggatttaccggccccac |
401 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
12752726 |
ggagaagcatcaataacatcgtcattttcaggaaacttgcgactttgttgacaagaataatcagacttctcagaattttttttggatttaccgaccccac |
12752825 |
T |
|
| Q |
402 |
tcctttcaatattttcatttgaaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcagattcaa |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752826 |
tcctttcaatattttcatttgaaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcagattcaa |
12752925 |
T |
|
| Q |
502 |
gcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgttgggcataaaac |
562 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12752926 |
gcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgtcgggcataaaac |
12752986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 2 - 562
Target Start/End: Original strand, 12815386 - 12815946
Alignment:
| Q |
2 |
cagagttaaatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaannnnnnnagttgggaggagttaaggcattgaaaacatcat |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12815386 |
cagagttacatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaagggggagagttgggaggagttaaggcattgaaaacatcat |
12815485 |
T |
|
| Q |
102 |
tctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaactcccaccaggctttgcaatgccagtcgggct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12815486 |
tctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaactcccaccaggctttgcaatgccagtcgggct |
12815585 |
T |
|
| Q |
202 |
ggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctgatttaatggcccagcaggaaattgtttgcggcaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12815586 |
ggcataattcacaggtagcacttgggcgctgatatcttctgatccattcaaatgaagagttttctgatttgatggcccagcaggaaattgtttgcggcaa |
12815685 |
T |
|
| Q |
302 |
ggagaagcatcaataacatcatcattttcaggaaacttgcgactttgttgacaagaataatcagacttctcagaannnnnnnnggatttaccggccccac |
401 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
12815686 |
ggagaagcatcaataacatcgtcattttcaggaaacttgcgactttgttgacaagaataatcagacttctcagaattttttttggatttaccgaccccac |
12815785 |
T |
|
| Q |
402 |
tcctttcaatattttcatttgaaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcagattcaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12815786 |
tcctttcaatattttcatttgaaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcagattcaa |
12815885 |
T |
|
| Q |
502 |
gcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgttgggcataaaac |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
12815886 |
gcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgtcgggcataaaac |
12815946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 423 - 562
Target Start/End: Complemental strand, 7774068 - 7773929
Alignment:
| Q |
423 |
aaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcagattcaagcatggaattgtagattctgc |
522 |
Q |
| |
|
|||| |||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
7774068 |
aaattgaaattgatttatcctggccataagttatgtctaaaacagacttgggggacgtattcatccgactcagattcaagcttggaattgtagattctgc |
7773969 |
T |
|
| Q |
523 |
aaaacttgaaaaccaaggtgtgccttgttgggcataaaac |
562 |
Q |
| |
|
|||| |||||||||| ||||| |||||| | ||||||||| |
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| T |
7773968 |
aaaatttgaaaaccacggtgtaccttgtcgagcataaaac |
7773929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 562
Target Start/End: Complemental strand, 7767896 - 7767794
Alignment:
| Q |
460 |
taaaacagacttgggagacgtgttcatcctactcagattcaagcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgttgggcataa |
559 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||| | |||||| |
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|
| T |
7767896 |
taaaacagacttgggggacgtattcatccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataa |
7767797 |
T |
|
| Q |
560 |
aac |
562 |
Q |
| |
|
||| |
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|
| T |
7767796 |
aac |
7767794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 401 - 496
Target Start/End: Complemental strand, 7778913 - 7778818
Alignment:
| Q |
401 |
ctcctttcaatattttcatttgaaatagaaaatgatttatcttggccatcagtgatgtctaaaacagacttgggagacgtgttcatcctactcaga |
496 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
7778913 |
ctccttttaatattttcattcacaatagaaaatgatttatcatggcaataagtgatgtctaaaacagacttgggagacgtattcatcagactcaga |
7778818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 7768215 - 7768095
Alignment:
| Q |
69 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
168 |
Q |
| |
|
|||||| ||||||||| | ||||||| ||||||||||| | ||||||| | |||||| ||||| || | || |||||||||||||||||| | ||||||| |
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|
| T |
7768215 |
agttggaaggagttaaaggattgaaatcatcattctctgtgaaatcataaacttccaaactgcgttcgtttctatcaggagcaacattcttaacatatga |
7768116 |
T |
|
| Q |
169 |
actcccaccaggctttgcaat |
189 |
Q |
| |
|
||| |||| | |||||||||| |
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|
| T |
7768115 |
acttccactaagctttgcaat |
7768095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 7779195 - 7779081
Alignment:
| Q |
71 |
ttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaac |
170 |
Q |
| |
|
|||| |||||||| | ||||||| | || |||||| | ||||||| | |||| | ||||| |||| | |||||| ||||||||||| ||||||||||| |
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|
| T |
7779195 |
ttggaaggagttacaggattgaaatcgtcgttctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaac |
7779096 |
T |
|
| Q |
171 |
tcccaccaggctttg |
185 |
Q |
| |
|
| |||||| |||||| |
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|
| T |
7779095 |
ttccaccaagctttg |
7779081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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