View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11619_low_30 (Length: 240)

Name: NF11619_low_30
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11619_low_30
NF11619_low_30
[»] chr1 (3 HSPs)
chr1 (24-153)||(10187153-10187286)
chr1 (66-153)||(10190104-10190191)
chr1 (161-233)||(33305897-33305969)
[»] chr4 (1 HSPs)
chr4 (158-238)||(43577750-43577830)
[»] chr7 (1 HSPs)
chr7 (158-240)||(42127232-42127314)
[»] chr8 (2 HSPs)
chr8 (161-233)||(15297086-15297158)
chr8 (161-233)||(15477455-15477527)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 10187286 - 10187153
Alignment:
Q  24 actacattataataagttaatcaaatgaacatgt----gggcataatgatgtggtttcatttgttggtcttagtcaaaatgttactatgaattttggtta 119  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  10187286 actacattataataagttaatcaaatgaacatgcatgcgggcataatgatgtggtttcttttgttggtcttagtcaaaatgttactatgaattttggttt 10187187  T
Q  120 acaaataatataggtagataagggaaccttccta 153  Q
    ||||||||||||||||||||||||||||||||||    
T  10187186 acaaataatataggtagataagggaaccttccta 10187153  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 10190191 - 10190104
Alignment:
Q  66 tgatgtggtttcatttgttggtcttagtcaaaatgttactatgaattttggttaacaaataatataggtagataagggaaccttccta 153  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  10190191 tgatgtggtttcttttgttggtcttagtcaaaatgtttgtatgaattttggttaacaaataatataggttgttaagggaaccttccta 10190104  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 33305897 - 33305969
Alignment:
Q  161 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 233  Q
    |||||||||| ||||||||| | ||||| |||||  |||| ||||| || ||||||||| | |||||||||||    
T  33305897 aggattttcaaatatctcattcttcaccaatcatcatctactgtgacaataaatcagctatgcacatagcagc 33305969  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 43577750 - 43577830
Alignment:
Q  158 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaacc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43577750 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaacc 43577830  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 42127232 - 42127314
Alignment:
Q  158 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaaccct 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42127232 tgaaggattttcacatatctcatccatcacccataattctctattgtgataacaaatcagctttacacatagcagcaaaccct 42127314  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 15297086 - 15297158
Alignment:
Q  161 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 233  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  15297086 aggactttctcatacctcatccatcacctatcattctctattgtgacaaaaaatcagctttacatatagcagc 15297158  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 15477455 - 15477527
Alignment:
Q  161 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 233  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  15477455 aggactttctcatacctcatccatcacctatcattctctattgtgacaaaaaatcagctttacatatagcagc 15477527  T

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