View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11619_low_4 (Length: 550)

Name: NF11619_low_4
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11619_low_4
NF11619_low_4
[»] chr8 (3 HSPs)
chr8 (245-541)||(6224065-6224355)
chr8 (52-138)||(17633502-17633588)
chr8 (146-253)||(28247579-28247689)
[»] chr3 (1 HSPs)
chr3 (398-541)||(25338367-25338509)
[»] chr4 (4 HSPs)
chr4 (246-541)||(37744154-37744447)
chr4 (332-421)||(21318685-21318774)
chr4 (244-313)||(24558143-24558212)
chr4 (492-538)||(24558349-24558394)
[»] chr2 (4 HSPs)
chr2 (244-471)||(27150300-27150533)
chr2 (261-407)||(7703324-7703472)
chr2 (317-429)||(24479995-24480105)
chr2 (484-541)||(27150558-27150614)
[»] chr7 (4 HSPs)
chr7 (392-542)||(26618356-26618506)
chr7 (392-541)||(26607793-26607939)
chr7 (392-538)||(26620332-26620474)
chr7 (68-137)||(24730090-24730159)
[»] chr1 (3 HSPs)
chr1 (244-407)||(39367185-39367350)
chr1 (244-336)||(12190658-12190751)
chr1 (484-541)||(39367446-39367502)
[»] chr5 (3 HSPs)
chr5 (244-323)||(31571706-31571785)
chr5 (68-137)||(31572078-31572142)
chr5 (455-541)||(31571617-31571702)
[»] chr6 (4 HSPs)
chr6 (244-310)||(24631354-24631420)
chr6 (417-541)||(24631492-24631615)
chr6 (165-253)||(24631233-24631326)
chr6 (476-533)||(1943319-1943375)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 245 - 541
Target Start/End: Complemental strand, 6224355 - 6224065
Alignment:
Q  245 tgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgttgtcctgttcaactcaacataggtatttgattcaatcatgcttttccttttcc 344  Q
    |||||| |||||||||||||||| ||||||||||||| |||| ||||||| ||||||| ||||||| |||| |||||||  |||||| |||||||||||     
T  6224355 tgagtgagtgttgttcttgttgaacaagagtttaacaagatcattgttgttctgttcagctcaacagaggtgtttgatttgatcatgtttttccttttca 6224256  T
Q  345 gttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtgattcaagc---tgttttttgtgcttatggtccggtaga 441  Q
      ||||||        |||| ||||||| |||| ||| ||||| |||||||| ||||||||||||| |||   | ||||||||||||| |||| |||||     
T  6224255 actggttt--------gatcactatttgggtagcttgtatgttatgttgtgtggttattgtgattctagcgttttttttttgtgcttagggtctggtagg 6224164  T
Q  442 attcggtttactttcatagaatataacaatattggatctttactctgtttagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
    ||| | ||||||||||| |||||||||||| | |||||||| ||||||| | ||||||||||||| || |||||||| ||||||||||||||||||||||    
T  6224163 attggttttactttcatggaatataacaatgtgggatctttcctctgttcaaaaagtagcaacac-ttaaatcaatatgattttgttgcttgcttcatct 6224065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 17633502 - 17633588
Alignment:
Q  52 tcattaacctctgttctttaaagtagtaaccctaaaaaccttcagcttattattagttattgggctgagtttttacgagttattggt 138  Q
    ||||||||| ||||||||||||||||||||| | ||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  17633502 tcattaacccctgttctttaaagtagtaaccttgaaaacattcggcttattattagttactgggctgagtttttacaagttattggt 17633588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 28247579 - 28247689
Alignment:
Q  146 ttacaaaatcagagttatatggtaaaacatgctaattgcca---atgtggaaaagacatagtgtagaggttaatgttaagggtgaccccttgtggctcgg 242  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||   |||| ||||| ||||| || || |||||||| |||||||||| | |||||||| |     
T  28247579 ttacaaaatcatagttagatggtcaaacatgccaattgccatctatgtagaaaatacataatgcaggggttaatgctaagggtgacgctttgtggcttgc 28247678  T
Q  243 aatgagtgtgt 253  Q
    |||||||||||    
T  28247679 aatgagtgtgt 28247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 398 - 541
Target Start/End: Original strand, 25338367 - 25338509
Alignment:
Q  398 gttattgtgattcaagctgttttttgtgcttatggtccggtagaattcggtttactttcatagaatataacaatattggatctttactctgtttagaaag 497  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  25338367 gttattgtgattcaagctgttttttgtgcttacggtctggtagaattcgttttactttcatggaatataacaatattgaatctttcctctgtttagaaag 25338466  T
Q  498 tagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  25338467 tagcaacac-ttaaatcaataggattttgttgcttgcttcatct 25338509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 246 - 541
Target Start/End: Original strand, 37744154 - 37744447
Alignment:
Q  246 gagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgttgtcctgttcaactcaacataggtatttgattcaatcatgcttttccttttccg 345  Q
    ||||| ||||||||||  |||| ||||||||||||| |||||||||||| ||||||| ||||||| || | |||||||  |||||||||||||||||  |    
T  37744154 gagtgagtgttgttctgtttgaacaagagtttaacacgatccttgttgttctgttcagctcaacagagatgtttgatttgatcatgcttttcctttttag 37744253  T
Q  346 ttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtgattcaagctgttttttgtgcttatggtccggtagaattc 445  Q
     |||||||||| |||||||   ||||| |||| ||| ||| |||||||||| ||||||||||||| |||||||||||  ||||  || | ||||| |||     
T  37744254 ctggtttctatatttgatcataatttgtgtagcttgtatggtctgttgtgtggttattgtgattctagctgtttttt-cgcttggggcctggtaggattg 37744352  T
Q  446 ggtttactttcatagaatataacaatattggatctttactctgtttagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
      ||||||||||| |||||||||||| |  |||| || |||| || ||||||||||||||| || ||||||| |||||||||| ||||||||||||    
T  37744353 attttactttcatggaatataacaatgtgagatccttcctctcttcagaaagtagcaacac-ttaaatcaattggattttgtttcttgcttcatct 37744447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 21318774 - 21318685
Alignment:
Q  332 cttttccttttccgttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtgattcaagctgttttt 421  Q
    |||||||||||  |||| ||| ||| ||||||| |||||||||||| ||| |||||||||||| | ||||||||||||| ||||| ||||    
T  21318774 cttttcctttttggttgatttttatatttgatcactatttgagtagcttgtatgttctgttgtatggttattgtgattctagctgctttt 21318685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 24558143 - 24558212
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgttgtcctgttcaactcaacatag 313  Q
    ||||||| |||||||| ||||||| |||||| |||||| ||||||||||||| |||||| ||| ||||||    
T  24558143 atgagtgagtgttgttattgttgaacaagagcttaacacgatccttgttgtcttgttcatctctacatag 24558212  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 538
Target Start/End: Original strand, 24558349 - 24558394
Alignment:
Q  492 agaaagtagcaacactttcaatcaataggattttgttgcttgcttca 538  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||    
T  24558349 agaaagtagcaacactta-aattaataggattttgttgcttgcttca 24558394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 471
Target Start/End: Original strand, 27150300 - 27150533
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgt--tgtcct-gttcaactcaacataggtatttgattcaatcatgcttttcctt 340  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||  |||| | ||||| ||| ||| |||| |||||||  |||||||||||||||    
T  27150300 atgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgttgtctttgttcatctctacagaggtgtttgattttatcatgcttttcctt 27150399  T
Q  341 ttccgttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtgattc---aagctgttttttgtgcttatggtccgg 437  Q
    |||  ||||||||||| ||||||| |||||||||||| ||| |||||||||||||| || ||||||| ||   | | ||||||||||||||| | |  ||    
T  27150400 ttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatctatatgatgttttttgtgcttaggatatgg 27150499  T
Q  438 tagaattcggtttactttcatagaatataacaat 471  Q
    ||| ||| | |||||| || | ||||||||||||    
T  27150500 taggattggttttactctcttggaatataacaat 27150533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 7703472 - 7703324
Alignment:
Q  261 ttgttgagcaagagtttaacatgatccttgt--tgtcctgttcaactcaacataggtatttgattcaatcatgcttttccttttccgttggtttctatgt 358  Q
    ||||||| |||||||||||||||||||||||  ||||||||||| ||| ||| |||| |||||||  ||||||||||||||||||  ||||||||||| |    
T  7703472 ttgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctctacaaaggtgtttgatttgatcatgcttttccttttcgattggtttctatat 7703373  T
Q  359 ttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtga 407  Q
    || ||| |||||||||||| ||| ||||||||||| || || |||||||    
T  7703372 tttatcactatttgagtagcttgtatgttctgttgcgtggtaattgtga 7703324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 429
Target Start/End: Complemental strand, 24480105 - 24479995
Alignment:
Q  317 tttgattcaatcatgcttttccttttccgttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtgattcaagctg 416  Q
    |||||||| |||||||||||  |||||||||||||||||| ||||||| |||||| ||||| ||| ||||| |||||||| ||||||||||||| | |||    
T  24480105 tttgattcgatcatgctttta-ttttccgttggtttctatatttgatcactatttaagtagcttgtatgttatgttgtgtggttattgtgattcta-ctg 24480008  T
Q  417 ttttttgtgctta 429  Q
    |||||||||||||    
T  24480007 ttttttgtgctta 24479995  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 27150558 - 27150614
Alignment:
Q  484 ctctgtttagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
    ||||||| ||||| || ||||||||  ||||||||||||||||||||||| |||||||    
T  27150558 ctctgttcagaaattaacaacactta-aatcaataggattttgttgcttggttcatct 27150614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 392 - 542
Target Start/End: Original strand, 26618356 - 26618506
Alignment:
Q  392 tgtgtagttattgtgattcaagctgtttttt-gtgcttatggtccggtagaattcggtttactttcatagaatataacaatattggatctttactctgtt 490  Q
    ||||| ||||||||||||| ||||||||||| |||||||  | | | ||||||| | ||||||||||| |||||||||||| |  |||| || |||||||    
T  26618356 tgtgtggttattgtgattctagctgtttttttgtgcttacagcctgctagaattggttttactttcatggaatataacaatgtcagatccttcctctgtt 26618455  T
Q  491 tagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatctc 542  Q
     ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26618456 cagaaagtagcaacac-ttaaatcaataggattttgttgcttgcttcatctc 26618506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 541
Target Start/End: Original strand, 26607793 - 26607939
Alignment:
Q  392 tgtgtagttattgtgattcaagctgttttttgtgcttatggtccggtagaattcggtttactttcatagaatataacaatattggatctttactctgttt 491  Q
    ||||| ||||||||||||| ||||||||||||| || || || |  ||||||| | ||||||||||| |||||||||||| |  |||| || |||||||     
T  26607793 tgtgtggttattgtgattctagctgttttttgttctcatagtgc--tagaattggttttactttcatggaatataacaatgtcagatccttcctctgttc 26607890  T
Q  492 agaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
     | ||||||||||||||  |||||||||||||||||||||||||||||||    
T  26607891 tggaagtagcaacactta-aatcaataggattttgttgcttgcttcatct 26607939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 538
Target Start/End: Original strand, 26620332 - 26620474
Alignment:
Q  392 tgtgtagttattgtgattcaagctgttttttgtgcttatggtccggtagaattcggtttactttcatagaatataacaatattggatctttactctgttt 491  Q
    ||||| ||||||||||||| |||||| ||||||||||| ||| |  ||| ||| | ||||||||||| |||||||| ||| |  |||| || |||||||     
T  26620332 tgtgtggttattgtgattctagctgtcttttgtgctta-ggtgc--taggattggttttactttcatggaatataaaaatgtcagatccttcctctgttc 26620428  T
Q  492 agaaagtagcaacactttcaatcaataggattttgttgcttgcttca 538  Q
    | ||||||||||||| || ||||||||||||||||||||||| ||||    
T  26620429 ataaagtagcaacac-ttaaatcaataggattttgttgcttgtttca 26620474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 24730090 - 24730159
Alignment:
Q  68 tttaaagtagtaaccctaaaaaccttcagcttattattagttattgggctgagtttttacgagttattgg 137  Q
    ||||||||||||||| | |||| ||||||||||||| || |||||||||||||||||||| |||||||||    
T  24730090 tttaaagtagtaaccttgaaaatcttcagcttattactaattattgggctgagtttttactagttattgg 24730159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 39367185 - 39367350
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgt--tgtcctgttcaactcaacataggtatttgattcaatcatgcttttccttt 341  Q
    ||||||| |||||||| |||||||  ||  |||||||||||| |||||  ||||||||||| ||| ||| |||| |||||||  ||||||||||||||||    
T  39367185 atgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgttgtcctgttcatctctacaaaggtgtttgatttgatcatgcttttccttt 39367284  T
Q  342 tccgttggtttctatgtttgatccctatttgagtagtttgcatgttctgttgtgtagttattgtga 407  Q
    |   ||||||||||| |||| || |||||||||||| ||| ||||| |||||||| || |||||||    
T  39367285 ttgattggtttctatatttgttcactatttgagtagcttgtatgttatgttgtgtggtaattgtga 39367350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 12190751 - 12190658
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagttt-aacatgatccttgttgtcctgttcaactcaacataggtatttgattcaatcatgctttt 336  Q
    ||||||| |||||||| ||||||| ||||||||| |||||| |||||||| ||||||||| ||| |||  ||| |||||||  |||||||||||    
T  12190751 atgagtgagtgttgttattgttgaacaagagttttaacatgttccttgttatcctgttcatctctacaatggtgtttgatttgatcatgctttt 12190658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 39367446 - 39367502
Alignment:
Q  484 ctctgtttagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||  ||||||||||    
T  39367446 ctctgttcagaaagtagcaacactta-aatcaataggattttgttggctgcttcatct 39367502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 31571785 - 31571706
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgttgtcctgttcaactcaacataggtatttgatt 323  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||| | ||||||| ||||||| || | |||||||    
T  31571785 atgagtgagtgttgttattgttgaacaagagtttaacatgatccttgttattctgttcagctcaacaaagatgtttgatt 31571706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 31572142 - 31572078
Alignment:
Q  68 tttaaagtagtaaccctaaaaaccttcagcttattattagttattgggctgagtttttacgagttattgg 137  Q
    ||||||||||||||| | |||| ||||||||||||||     |||||||||||||||||| |||||||||    
T  31572142 tttaaagtagtaaccttgaaaatcttcagcttattat-----attgggctgagtttttactagttattgg 31572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 541
Target Start/End: Complemental strand, 31571702 - 31571617
Alignment:
Q  455 tcatagaatataacaatattggatctttactctgtttagaaagtagcaacactttcaatcaataggattttgttgcttgcttcatct 541  Q
    |||| |||||||||| | |  |||| || ||||||| ||||||| |||||||||  ||||||||||||||||||| ||| |||||||    
T  31571702 tcatggaatataacattgtgagatccttcctctgttcagaaagtggcaacactta-aatcaataggattttgttgtttgattcatct 31571617  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 24631354 - 24631420
Alignment:
Q  244 atgagtgtgtgttgttcttgttgagcaagagtttaacatgatccttgttgtcctgttcaactcaaca 310  Q
    ||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||||| | |||||||    
T  24631354 atgagtgagagttgttcttgttgaacaagagtttaatatgatccttgttgttctgttaagctcaaca 24631420  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 541
Target Start/End: Original strand, 24631492 - 24631615
Alignment:
Q  417 ttttttgtgcttatggtccggtagaattcggtttactttcatagaatataacaatattggatctttactctgtttagaaagtagcaacactttcaatcaa 516  Q
    ||||||||||| | | || ||||| ||| | ||||||||||| ||||| |  |||||  |||| || |||| || ||||||| |||||||||  ||||||    
T  24631492 ttttttgtgctaaggttcaggtaggattggttttactttcatggaatagagaaatatcagatccttcctcttttcagaaagttgcaacacttg-aatcaa 24631590  T
Q  517 taggattttgttgcttgcttcatct 541  Q
    |||||||||||| ||||||||||||    
T  24631591 taggattttgttccttgcttcatct 24631615  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 24631233 - 24631326
Alignment:
Q  165 tggtaaaacatgctaattgccaa---tgtggaaaagacatagtgtagagg-ttaatgttaagggtgacccc-ttgtggctcggaatgagtgtgt 253  Q
    ||||||||||||| ||| |||||   || ||||||||| |||||||| || |||||||||||| ||||||| |||||||||| |||||||||||    
T  24631233 tggtaaaacatgccaatcgccaactatgcggaaaagacgtagtgtagggggttaatgttaaggatgacccctttgtggctcgtaatgagtgtgt 24631326  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 1943375 - 1943319
Alignment:
Q  476 gatctttactctgtttagaaagtagcaacactttcaatcaataggattttgttgcttg 533  Q
    |||| |||||||||||||||||||| ||||| || |||||||||  ||||||||||||    
T  1943375 gatccttactctgtttagaaagtagtaacac-ttaaatcaatagacttttgttgcttg 1943319  T

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