View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_6 (Length: 538)
Name: NF11619_low_6
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Original strand, 1251238 - 1251756
Alignment:
| Q |
13 |
gcagagatgcatgagagagtaataaattgaagtgttgcaactaaagagttttgtggcaatataaacgaatagtgcaatgaaaaagtgtaataccctttgt |
112 |
Q |
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| T |
1251238 |
gcagagatgcatgagagagtaataaattgaagtgttgcaactaaagagttttgtagcaatataaacgaatagtgcaatgaaaaagtgtaataccctttgt |
1251337 |
T |
|
| Q |
113 |
tttcctgtgaaagcttgacctcctgcttgctccatcaaatatgacattggaaaaacttcatacagaaccctgataatttacagtcaaatttcatatccat |
212 |
Q |
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| T |
1251338 |
tttcctgtgaaagcttgacctcctgcttgctccatcaaatatgacattggaaaaacttcatacagaaccctgataatttacagtcaaatttcatatccat |
1251437 |
T |
|
| Q |
213 |
cagttattagtttaaacatatcatataacacaactcgatcaattaaaacagataagaattcgccaagctctcatctatgtatggagtattgcaaacgaga |
312 |
Q |
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| T |
1251438 |
cagttattagtttaaacatatcatataacacaactcgatcaattaaaacagataagaattcgccaagctctcatctatgtatggagtattgcaaacaaga |
1251537 |
T |
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| Q |
313 |
ctacatatcccaataatttaggtcctcaaacctgctatgggccaaactcctgagtcggcaaggaaatgtccgattttaaaatgtccttaggtcttaggag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251538 |
ctacatatcccaataatttaggtcctcaaacctgctatggacctaactcctgagtcggcaaggaaatgtccgattttaaaatgtccttaggtcttaggag |
1251637 |
T |
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| Q |
413 |
aattcagattacttttctatcggagaatcattttactaactctcctaagacctaaggatgctagatcaattgttaattacaaatagacacaccaaagtat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251638 |
aattcagattacttttctatcggagaatcattttactaactctcctaagacctaaggatgctagatcaattgttaattacaaatagacacaccaaagtat |
1251737 |
T |
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| Q |
513 |
aatattcttaccttagctt |
531 |
Q |
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|||| |||||||||||||| |
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| T |
1251738 |
aatagtcttaccttagctt |
1251756 |
T |
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