View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11619_low_8 (Length: 472)
Name: NF11619_low_8
Description: NF11619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11619_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 46936938 - 46937386
Alignment:
| Q |
1 |
ataactacagctataaatcagaaccaaatcttgcacttattcatcttagtgttgtatacgnnnnnnnnnnnnttaaagataaccttgatattggaattct |
100 |
Q |
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| T |
46936938 |
ataactacagctataaatcagaaccaaatcttgcacttattcatcttagtgttaaaaa--------------ttaaagataaccttgatattggaattct |
46937023 |
T |
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| Q |
101 |
gctctttaagatatttcccaacacctgttatggtaccaccagtacctataccactgacaaatgcatcaactttccctcctgtgcctttccatatctctgg |
200 |
Q |
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| T |
46937024 |
gctctttaagatatttcccaacacctgttatggtaccaccagtacctataccactgacaaatgcatcaactttccctcctgtgcctttccatatctctgg |
46937123 |
T |
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| Q |
201 |
accagtggtttcataatgcacctgtaaatacaacgataataacaaatgtgtcatccaaagttgtcgactattaactgccaaagttttagaacaaatgagt |
300 |
Q |
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| T |
46937124 |
accagtggtttcataatgcacctgtaaatacaacgataataacaaatgtgtcatccaaagttgtcgactattaactgccaaagttttagaacaaatgagt |
46937223 |
T |
|
| Q |
301 |
agatagatacctttggattggcggggttttcaaattgctgaaggatataggcatttggagtcttggttaatatctcttcagctttctgaactgccccttt |
400 |
Q |
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| T |
46937224 |
agatagatacctttggattggcggggttttcaaattgctgaaggatataggcatttggagtctcggttaatatctcttcagctttctgaactgccccttt |
46937323 |
T |
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| Q |
401 |
cattccctttgcaggatctgtcataaccaactcaactccaaaagatagaagaatggttcttct |
463 |
Q |
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| T |
46937324 |
cattccctttgcaggatctgtcagaaccaactcagctccaaaagatagaagaatggttcttct |
46937386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 466
Target Start/End: Complemental strand, 36277132 - 36276975
Alignment:
| Q |
309 |
acctttggattggcggggttttcaaattgctgaaggatataggcatttggagtcttggttaatatctcttcagctttctgaactgcccctttcattccct |
408 |
Q |
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| T |
36277132 |
acctttgggtttgcaggattttcaaattgctgaagaatgtaagcattgggagtctttgctagtatctcttcggctttctgaacagctcctttcatgcctt |
36277033 |
T |
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| Q |
409 |
ttgcaggatctgtcataaccaactcaactccaaaagatagaagaatggttcttctctc |
466 |
Q |
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| T |
36277032 |
tagctggatctgtgagaactaactcagcaccaaatgcgcgaagaatggttcttctctc |
36276975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 36277340 - 36277222
Alignment:
| Q |
97 |
ttctgctctttaagatatttcccaacacctgttatggtaccaccagtacctataccactgacaaatgcatcaactttccctcctgtgcctttccatatct |
196 |
Q |
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||||||||||| | |||||| ||| ||||||||| ||||| || || ||||||||| |||| |||||||||||||| || | || |||||| |||| |
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| T |
36277340 |
ttctgctctttcaaatattttccagcacctgttactgtacctccggttcctataccagaaacaagggcatcaactttcccaccagagcttttccagatct |
36277241 |
T |
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| Q |
197 |
ctggaccagtggtttcata |
215 |
Q |
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|||| ||||| |||||||| |
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| T |
36277240 |
ctggtccagtagtttcata |
36277222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 862694 - 862551
Alignment:
| Q |
80 |
taaccttgatattggaattctgctctttaagatatttcccaacacctgttatggtaccaccagtacctataccactgacaaatgcatcaactttccctcc |
179 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||| |||| |||||| | |
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| T |
862694 |
taacctttatattggaattttgctctttaagatatttcccagcaccggttatggtaccaccagtacctatcccagaaacaaatgcgtcaattttcccatc |
862595 |
T |
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| Q |
180 |
tgtgcctttccatatctctggaccagtggtttcataatgcacct |
223 |
Q |
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| T |
862594 |
cgtgcctttccatatctctggaccggtggtttcataatgtacct |
862551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 307 - 463
Target Start/End: Complemental strand, 862478 - 862322
Alignment:
| Q |
307 |
atacctttggattggcggggttttcaaattgctgaaggatataggcatttggagtcttggttaatatctcttcagctttctgaactgcccctttcattcc |
406 |
Q |
| |
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||||||| |||||||| |||||||||||||| ||||| || |||||||| || ||||| | || | |||||||||||||||||| || ||||||||||| |
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| T |
862478 |
ataccttgggattggcagggttttcaaattgttgaagtatgtaggcattgggtgtcttagccaacagctcttcagctttctgaacagctcctttcattcc |
862379 |
T |
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| Q |
407 |
ctttgcaggatctgtcataaccaactcaactccaaaagatagaagaatggttcttct |
463 |
Q |
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| T |
862378 |
ctttgcagggtctgtcaaaaccaattcagctccaaaagctaatagaatgattcttct |
862322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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