View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1161_low_1 (Length: 379)
Name: NF1161_low_1
Description: NF1161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1161_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 379
Target Start/End: Complemental strand, 1856234 - 1855881
Alignment:
| Q |
30 |
ccaacagtgttattacaatttgcttcacttaggcatgtatgatttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgtttgccg |
129 |
Q |
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| T |
1856234 |
ccaacagtgttattacaatttgcttcacttaggcatgtatgatttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgtttgccg |
1856135 |
T |
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| Q |
130 |
gtcaaatcactagtttgtatgattctcatcataatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataa |
229 |
Q |
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| T |
1856134 |
gtcaaatcactagtttgtatgattctcatcataatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataa |
1856035 |
T |
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| Q |
230 |
ttaagagaaaccaaattcaataaaacattgaagatacgaagcattatcaattaattaaactacaaaag--nnnnnnnnnctgtggtttacaatcatgata |
327 |
Q |
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| T |
1856034 |
ttaagagaaaccaaattcaataaaacattgaagatatgaagcattatcaattaattaaactacaaaagaaaaagaaaaactgtgatttacaatcatgata |
1855935 |
T |
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| Q |
328 |
tgt--ttgttacctctacagcctccgggaacgtatggatttccttcaaaacctg |
379 |
Q |
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| T |
1855934 |
tgtacttgttacctctacagcctccgggaacgtatggatttccttcaaaacctg |
1855881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 1817162 - 1817230
Alignment:
| Q |
228 |
aattaagagaaaccaaattcaataaaacattgaagatacgaagcattatcaattaattaaactacaaaa |
296 |
Q |
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| T |
1817162 |
aattaagaggaaccaaattcaataaaacattgaaaatatgaagcacaatcaattaattaaactgcaaaa |
1817230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 1817259 - 1817309
Alignment:
| Q |
328 |
tgtttgttacctctacagcctccgggaacgtatggatttccttcaaaacct |
378 |
Q |
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| T |
1817259 |
tgtttgttacctgtgcagcctccaggaaggtatggatttccttcaaaacct |
1817309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 37567220 - 37567166
Alignment:
| Q |
71 |
atttgatgtcgcacattcattaatgtctgaaagacaataaaaagcatggttgttt |
125 |
Q |
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| T |
37567220 |
atttgatgtcacacattcgttaatgtctgaaagacaataaaaagcatggttgttt |
37567166 |
T |
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