View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1161_low_2 (Length: 357)
Name: NF1161_low_2
Description: NF1161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1161_low_2 |
 | |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 55908302 - 55907950
Alignment:
| Q |
1 |
tttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908302 |
tttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaagg |
55908203 |
T |
|
| Q |
101 |
aagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908202 |
aagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatg |
55908103 |
T |
|
| Q |
201 |
aagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908102 |
aagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcat |
55908003 |
T |
|
| Q |
301 |
gagttaaaaatggatatttcaacatcataacctcttcaagaaactcacaattc |
353 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
55908002 |
gagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattc |
55907950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3438227 - 3438006
Alignment:
| Q |
1 |
tttgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaa |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||| | ||| || ||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
3438227 |
tttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaa |
3438128 |
T |
|
| Q |
98 |
aggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagcca |
197 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||||||| ||| | |||||||||||| |||||||||||| || |||| |||||||||| || || |
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|
| T |
3438127 |
aggaagacctccaattgcaatagaggaaagtaattcatccgggatacatgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtca |
3438028 |
T |
|
| Q |
198 |
atgaagtttgaaccaatgttgt |
219 |
Q |
| |
|
||||||| |||| |||||||| |
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| T |
3438027 |
atgaagtgtgaattaatgttgt |
3438006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 547486 - 547743
Alignment:
| Q |
46 |
atattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcg |
145 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||| | || ||||||||||||| | ||||| ||||||||| || |
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|
| T |
547486 |
atattccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaacatatccgagatacg |
547585 |
T |
|
| Q |
146 |
caaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatcta |
245 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| || ||||||| |||| | || |||| || ||||||| ||||| |||| |||| || |
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| T |
547586 |
tgaagaccgaaaatcaagacaagttaagcccttcaaacacatcaacgagtcaataaggtgcgaactaa---tgtcatgccttccctttgacggccattta |
547682 |
T |
|
| Q |
246 |
acggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagtta |
306 |
Q |
| |
|
| ||| |||||| |||||| |||||| |||||||||||||||| | ||||||| ||||| |
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|
| T |
547683 |
atggagagagacctcaaagatggtctcacacggatagcagaagctatgccatcattagtta |
547743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 21833929 - 21833760
Alignment:
| Q |
30 |
ttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca |
129 |
Q |
| |
|
|||||||||||| | | |||||| ||||| ||||||||||||| ||| | |||||||| || | |||||||||||| || |||||||||| | || | |
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|
| T |
21833929 |
ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta |
21833830 |
T |
|
| Q |
130 |
attcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
199 |
Q |
| |
|
| |||||| |||| |||||| |||| |||||||||| || || ||||||||||| || |||||||| |
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|
| T |
21833829 |
actcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaat |
21833760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 641482 - 641574
Alignment:
| Q |
29 |
cttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaataga |
121 |
Q |
| |
|
||||||||||||| | | |||||| ||||| |||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
641482 |
cttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaataga |
641574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 6007006 - 6007054
Alignment:
| Q |
151 |
acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
199 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
6007006 |
acgacaaatcaagacaagttaagcctttcaatttcaccaacgagtcaat |
6007054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 1037238 - 1036886
Alignment:
| Q |
1 |
tttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1037238 |
tttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaagg |
1037139 |
T |
|
| Q |
101 |
aagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037138 |
aagacctcccattgcaatagaaaaaagcaattcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaaactcaccaacgagccaatg |
1037039 |
T |
|
| Q |
201 |
aagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcat |
300 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1037038 |
aagtttgcaccaatgttgtcatgccttccatttgttctccatctaacaaatagagacttcaaagtaggtctctcacggatagcagaagcgacatcatcat |
1036939 |
T |
|
| Q |
301 |
gagttaaaaatggatatttcaacatcataacctcttcaagaaactcacaattc |
353 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036938 |
gagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattc |
1036886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 17627631 - 17627397
Alignment:
| Q |
3 |
tgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaag |
99 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||| |||||||| |||| ||||| |||||| | ||||||||| |||||||||| |
|
|
| T |
17627631 |
tgaagatccaaatgttggatacattgacacatggataacaaagaaaatattccagaataactatagttaatgcaatctctgaggacaagccttctcaaag |
17627532 |
T |
|
| Q |
100 |
gaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
199 |
Q |
| |
|
|| | || | |||||||||||| | || || ||| |||||||||||| ||| ||||| |||| ||||| || ||||||||||||| |||| || | |
|
|
| T |
17627531 |
aaataacttcaattgcaatagaagagaggaacatatctgagatgcgcaaaaacggcaaatcaagatttgttaaccctttcaaactcaccagcgagtcagt |
17627432 |
T |
|
| Q |
200 |
gaagtttgaaccaatgttgtcatggcttccatttg |
234 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| |
|
|
| T |
17627431 |
aaagtgtgaactgatgttgtcatggcttccatttg |
17627397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 44244815 - 44244852
Alignment:
| Q |
316 |
atttcaacatcataacctcttcaagaaactcacaattc |
353 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44244815 |
atttcaacatcctaacctcttcaagaaactcacaattc |
44244852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 17627361 - 17627258
Alignment:
| Q |
249 |
gatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggatatttcaacatcataacctcttcaagaaactcac |
348 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| |||||||| | |||||| |||||| ||| ||| || |||| || ||||||||| |||||||||| |
|
|
| T |
17627361 |
gataaagacctcaaagatggtctctcacggatggcagaagcaatgccatcacaagttaaggatgaatacttgaacaacacaacctcttcgagaaactcac |
17627262 |
T |
|
| Q |
349 |
aatt |
352 |
Q |
| |
|
|||| |
|
|
| T |
17627261 |
aatt |
17627258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 462 - 507
Alignment:
| Q |
30 |
ttggataacaaagagtatattccaacataattatagccggtgcaat |
75 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
462 |
ttggataacaaagagtagattccagcataattatagccggtgcaat |
507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 6436757 - 6436798
Alignment:
| Q |
5 |
aagatccaaatgttgtatac-gacacttggataacaaagagt |
45 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6436757 |
aagatccaaatgttgtatactgacacttggataacaaagagt |
6436798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 6403407 - 6403458
Alignment:
| Q |
5 |
aagatccaaatgttgtatacg---acacttggataacaaagagtatattcca |
53 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6403407 |
aagatccaaatgttgtatacatctacacttggataacagagagtatattcca |
6403458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 6594176 - 6594125
Alignment:
| Q |
5 |
aagatccaaatgttgtatac---gacacttggataacaaagagtatattcca |
53 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
6594176 |
aagattcaaatgttgtatacatcgacacttggataacaaagagtacattcca |
6594125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 17352166 - 17352303
Alignment:
| Q |
1 |
tttgaagatccaaatgttgtatacga---cacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaa |
97 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||||||||||| | ||||| ||||| | ||||| ||| ||| ||| ||||||||||| || || |
|
|
| T |
17352166 |
tttgaagatcctaatgttggatacgttggcacttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaa |
17352265 |
T |
|
| Q |
98 |
aggaagacctcccattgcaatagaaaaaagcaattcat |
135 |
Q |
| |
|
||||| ||| || |||||||||| | |||||||||| |
|
|
| T |
17352266 |
aggaaaaccctcctttgcaatagaggagagcaattcat |
17352303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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