View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1161_low_5 (Length: 216)
Name: NF1161_low_5
Description: NF1161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1161_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1855545 - 1855750
Alignment:
| Q |
1 |
ataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1855545 |
ataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatacaagcatttaaattctcaccttctac |
1855644 |
T |
|
| Q |
101 |
actatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaacatatcaagaaactgccttataacactttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1855645 |
actatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaacatattaagaaactgccttataacactttc |
1855744 |
T |
|
| Q |
201 |
cctatg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
1855745 |
cctatg |
1855750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 1817646 - 1817472
Alignment:
| Q |
1 |
ataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctac |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||| ||||||||| | ||||||||||||||| || ||||||||||||||| || ||||||| |
|
|
| T |
1817646 |
ataacactggaaaatgcacaggtttagggtgttgccaagtggatattccttctagtatgaaaaatatcacaattgaagcatttaaattcccaacttctac |
1817547 |
T |
|
| Q |
101 |
actatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaacatat |
175 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
1817546 |
cctatctaaggaaaattcttgtagctattcctttattgcaaaacaaggatcctataaattttctgtagaccatat |
1817472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 37567045 - 37567171
Alignment:
| Q |
20 |
aggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatggaaaattct |
119 |
Q |
| |
|
||||||||| ||||| |||| ||||||||| | ||||||||||||||| || ||| ||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
37567045 |
aggtttagggtgttgccaagtggatattccttctagtatgaaaaatatcacaattgaaacatttaaattcccaacttctacactgtctatggaaaattct |
37567144 |
T |
|
| Q |
120 |
tgtagctattcctttattgcaaaacaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37567145 |
tgtagctattcctttattgcaaaacaa |
37567171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University