View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11620_high_1 (Length: 653)

Name: NF11620_high_1
Description: NF11620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11620_high_1
NF11620_high_1
[»] chr1 (1 HSPs)
chr1 (5-637)||(35915605-35916237)


Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 5 - 637
Target Start/End: Complemental strand, 35916237 - 35915605
Alignment:
Q  5 gagaagcaaaggattaaggcnnnnnnntgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctaggg 104  Q
    ||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916237 gagaaccaaaggattaaggcaaaaaaatgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctaggg 35916138  T
Q  105 cttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916137 cttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagat 35916038  T
Q  205 caagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916037 caagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagt 35915938  T
Q  305 tatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915937 tatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagc 35915838  T
Q  405 tgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctctgattcgcttggtagcggagaagaagatgaag 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35915837 tgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctccgattcgcttggtagcggagaagaagatgaag 35915738  T
Q  505 ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915737 ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga 35915638  T
Q  605 tgaaaatgatgatggctgaggcagcaagcaagc 637  Q
    |||||||||||||||||||||||||||||||||    
T  35915637 tgaaaatgatgatggctgaggcagcaagcaagc 35915605  T

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