View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11620_high_2 (Length: 566)
Name: NF11620_high_2
Description: NF11620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11620_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 46895053 - 46895633
Alignment:
| Q |
1 |
tttgcatcgggatccttggatgtactgtatcaatcattgtccctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacac |
100 |
Q |
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| T |
46895053 |
tttgcatcgggatccttggatgtactgtatcaatcattgtccctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacac |
46895152 |
T |
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| Q |
101 |
aac-aagttcaaaaatcaaaataaagggaatgtcataaataagatcgtatacatacgggtacgctagtacgagaaacaagaacatataatcaattatatc |
199 |
Q |
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| T |
46895153 |
aactaagttcaaaaatcaaaatagagggaatgtcataaataagatcgtatacatacgggtacgttagtacgagaaacgagaacatataatcaattatatc |
46895252 |
T |
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| Q |
200 |
aatccgatcgcaattcattaaaattaatagttgtgatatatttttaattaaaagacgtcggtgatctaaaattaatggttttgttgagatctataccatc |
299 |
Q |
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| T |
46895253 |
aatccgatcgcaattcattaaaattaatagttgtgatatatttttaattaaaagacgtcggtgatctaaaattaatggttttgttgagatctacaccgtc |
46895352 |
T |
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| Q |
300 |
cggtcttgattgaacggtcgca--------------gtgaatgtgttcagtcagtgacgatgtgaaattttggtcaccatatagctctatgccactgtat |
385 |
Q |
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| T |
46895353 |
cgatcttgattgaacggtcacactgtcattgccgtcgtgaatgtgttcaggcagcgacgacgtgaaatttcggtcaccatatagctctatgccaccgtat |
46895452 |
T |
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| Q |
386 |
cttagcttggatcggaatacgaaatgcttcttttcccccaagaatgtgtgatgatcctatccaatgttgccctatctttctaacaaaatactacgttctt |
485 |
Q |
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| T |
46895453 |
cttagcttggatcggaatacgaaatgcttcttttcccccaagaacgtgtgatgatcctatccaatgttgccctatctttctaacaaaatactacgttctt |
46895552 |
T |
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| Q |
486 |
gaaaaacatctcttttctaacaatggtaacttgatcatctctatctacatgcctttcctcatcaccaccctatatatctct |
566 |
Q |
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| T |
46895553 |
gaaaaacatctcttttctaacaatggtaacttgattatctctttctacatgcctttcctcatcaccaccctatatatctct |
46895633 |
T |
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