View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11620_low_1 (Length: 653)

Name: NF11620_low_1
Description: NF11620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11620_low_1
NF11620_low_1
[»] chr1 (1 HSPs)
chr1 (5-637)||(35915605-35916237)


Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 5 - 637
Target Start/End: Complemental strand, 35916237 - 35915605
Alignment:
Q  5 gagaagcaaaggattaaggcnnnnnnntgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctaggg 104  Q
    ||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916237 gagaaccaaaggattaaggcaaaaaaatgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctaggg 35916138  T
Q  105 cttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916137 cttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagat 35916038  T
Q  205 caagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916037 caagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagt 35915938  T
Q  305 tatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915937 tatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagc 35915838  T
Q  405 tgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctctgattcgcttggtagcggagaagaagatgaag 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35915837 tgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctccgattcgcttggtagcggagaagaagatgaag 35915738  T
Q  505 ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915737 ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga 35915638  T
Q  605 tgaaaatgatgatggctgaggcagcaagcaagc 637  Q
    |||||||||||||||||||||||||||||||||    
T  35915637 tgaaaatgatgatggctgaggcagcaagcaagc 35915605  T

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