View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11620_low_3 (Length: 472)
Name: NF11620_low_3
Description: NF11620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11620_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 39 - 457
Target Start/End: Complemental strand, 39090660 - 39090239
Alignment:
| Q |
39 |
gttacatttagccccaacaatttcttaaatcgtcgctcctctagatggataaagacatataagataatgatttttcttgtgttcagttgggtgaatccag |
138 |
Q |
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| T |
39090660 |
gttacatttagccccaacaatttcttaaattgacgctcctctaaatggataaagacatataagataatgttttttcttgtgtccagttgggtaaatccgg |
39090561 |
T |
|
| Q |
139 |
actggaacgatttttaagaatcgtaggtgaaaag---ctcccttaaaaagaatagattcattacaaacctgggttagcggttccaaacaatatatccgca |
235 |
Q |
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| T |
39090560 |
actggaacgatttttaagaatcgtaggtgaaaagaagctcccttaaaaaggatagattcattacaaacctgggttagtggttccaaacaatatatccgca |
39090461 |
T |
|
| Q |
236 |
atggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatcattctttgcaaaagttatatctataggaccaccagaca |
335 |
Q |
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| T |
39090460 |
atggcagcaccaccggcttgaccaggataaccagcccacaaaatgcccataattcgaggatcattctttgcaaaagttatatctataggcccaccagaca |
39090361 |
T |
|
| Q |
336 |
ttaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcctatctaccatttc |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39090360 |
ttaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcctatctaccatttc |
39090261 |
T |
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| Q |
436 |
agcctcaattgactgatccaat |
457 |
Q |
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| T |
39090260 |
agcctcaattgactgatccaat |
39090239 |
T |
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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 444
Target Start/End: Original strand, 44714921 - 44715167
Alignment:
| Q |
198 |
acaaacctgggttagcggttccaaacaatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatc |
297 |
Q |
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||||||||||| |||| |||||||| || || || ||||| ||||||||||| ||||| || |||||||| |||||||| ||||| || | || || |
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| T |
44714921 |
acaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtc |
44715020 |
T |
|
| Q |
298 |
attctttgcaaaagttatatctataggaccaccagacattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttga |
397 |
Q |
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| T |
44715021 |
attctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttggtccctttgatgcagctgccacctttgaaacaagatcttgttga |
44715120 |
T |
|
| Q |
398 |
tgtccaggaagaagtaaaccagtcctatctaccatttcagcctcaat |
444 |
Q |
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| T |
44715121 |
tgtccaggcaaaagcaagctagtcctatcaacagtttcagcttcaat |
44715167 |
T |
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