View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11620_low_6 (Length: 234)
Name: NF11620_low_6
Description: NF11620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11620_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 36537419 - 36537271
Alignment:
| Q |
72 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagattttctacgaagagtagatgtaccc |
171 |
Q |
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| T |
36537419 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagattttctacgaagagtagatgtaccc |
36537320 |
T |
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| Q |
172 |
ataacgaggacgattagggaaaccgctagaagggtcttgatgatatttt |
220 |
Q |
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| T |
36537319 |
ataacgaggaagattagggaaaccgctagaagggtcttgatgatatttt |
36537271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 36537542 - 36537486
Alignment:
| Q |
16 |
cataggattgaagatttaaatgatttaggtgtcgagttcatggatttcagacttaga |
72 |
Q |
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| T |
36537542 |
cataggattgaagatttaaatgatttaggtgtcgagttcatggatttcagacttaga |
36537486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 10231604 - 10231534
Alignment:
| Q |
80 |
ttaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagatttt |
150 |
Q |
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| T |
10231604 |
ttaattgcttgtaatcaaacgttgtagcacactgtgcaaacattcaatcatagtggaagaccgtggatttt |
10231534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 31633885 - 31633822
Alignment:
| Q |
87 |
cttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagatttt |
150 |
Q |
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| T |
31633885 |
cttgtcatcaaaccttgtagcacattgtgcaaactttcaatcatagtggaaggtcgtggatttt |
31633822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 23333864 - 23333946
Alignment:
| Q |
80 |
ttaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtaga-ttttctacgaagagt |
161 |
Q |
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| T |
23333864 |
ttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcattgtggaagattgtagatttttctacgaagagt |
23333946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 17275062 - 17275121
Alignment:
| Q |
72 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcata |
131 |
Q |
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| T |
17275062 |
aagcttcgttaattacttgttatcaaaccttgtagaactttgtgcaaacattcaatcata |
17275121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 16717131 - 16717232
Alignment:
| Q |
72 |
aagcttcattaattacttgtaatcaaaccttttagca-cactgtgcaaacattcaatcatagtggaagatcgtag-attttctacgaagagtagatgtac |
169 |
Q |
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|||||||||||| |||||||||||||||||| || || | ||||||||||||||| || ||||||||| ||||| ||||||||| |||||| |||||| |
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| T |
16717131 |
aagcttcattaactacttgtaatcaaaccttataacattagtgtgcaaacattcaagcaaagtggaagaccgtagaattttctacaaagagtgaatgtac |
16717230 |
T |
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| Q |
170 |
cc |
171 |
Q |
| |
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|| |
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| T |
16717231 |
cc |
16717232 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 13794901 - 13794830
Alignment:
| Q |
80 |
ttaattacttgtaatcaaaccttttagcac-actgtgcaaacattcaatcatagtggaagatcgtagatttt |
150 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
13794901 |
ttaattacttgtaatcaaaccttgtagcacttgggtgcaaacattcattcatagtggaaagtcgtagatttt |
13794830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 16241990 - 16241941
Alignment:
| Q |
112 |
tgtgcaaacattcaatcatagtggaagatcgtaga-ttttctacgaagag |
160 |
Q |
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| T |
16241990 |
tgtgcaaacattcaatcatagtggaaggtcatagatttttctacgaagag |
16241941 |
T |
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