View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_1 (Length: 658)
Name: NF11621_high_1
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 10 - 641
Target Start/End: Complemental strand, 2346000 - 2345372
Alignment:
| Q |
10 |
aagcagagaccaaaagtcatgataaaaaacatttaggagatcaaaacttggtnnnnnnnnnntttaggggggtcaaaaacgaaatttgagatttttatag |
109 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2346000 |
aagcagagaccaaaagtcgtgataaaaaacatttaggagatcaaaacttggtaaaaaaaa---ttaggggggtcaaaaacgaaatttgagatttttatag |
2345904 |
T |
|
| Q |
110 |
ggatcaaaggtcttattaaaccctaaaacaaattactctaaggttacgttgttttaaggaaacaacaataataaatagatatcttttattttcttactca |
209 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
2345903 |
ggatttaaagtcttattaaaccctaaaacaaattactctaaggttacattgctttaaggaaacaacaatgataagtagatatcttttattttcttacgca |
2345804 |
T |
|
| Q |
210 |
ctttcaacaactcattttctctctatctttctcgtcctatcacattgacaaactatcatatctatcacatcactctcattttctcattggaaattatttc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345803 |
ctttcaacaactcattttctctctatctttctcgtcctatcctattgacaaactatcatatctatcacatcactctcattttctcattggaaattatttc |
2345704 |
T |
|
| Q |
310 |
tagctagtacattttacagctattgcaactttacaaattaaggctttatattttccatctctaagaatatcattataaatagcaaggcaattgcactttc |
409 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345703 |
tagctagtacattttacagctattgcaactctacaaattaaggctttatattttccatctctaagaatatcattataaatagcaaggcaattgcactttc |
2345604 |
T |
|
| Q |
410 |
ccttatcccatatccaatttgtaaagatcagaatgattcacactattcttttcttttttgttcttctctcatcatatacctcttatgctgatgatttatg |
509 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345603 |
ccttatcccatatccaatttgtaaaaatcagaatgattcacactattcttttcttttttgttcttctctcatcatatacctcttatgctgatgatttatg |
2345504 |
T |
|
| Q |
510 |
tgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctggcttagtacct |
609 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345503 |
tgtagcagacttactactcccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctggcttagtacct |
2345404 |
T |
|
| Q |
610 |
ggaagcacaataaacccttttaattttgcaat |
641 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2345403 |
ggaagcacaataaacccttttaattttgcaat |
2345372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 500 - 633
Target Start/End: Original strand, 7319492 - 7319625
Alignment:
| Q |
500 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
599 |
Q |
| |
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||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| | |
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| T |
7319492 |
atgatttctgtgttgcagacttacagcttccaaataccccttcaggctatccatgcaagtcagaaacaaatgtaacagtggatgattttttattctccga |
7319591 |
T |
|
| Q |
600 |
cttagtacctggaagcacaataaacccttttaat |
633 |
Q |
| |
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||| |||||| ||| ||||||| ||||||||||| |
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| T |
7319592 |
ctttgtacctagaaacacaatagacccttttaat |
7319625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 500 - 621
Target Start/End: Original strand, 7321812 - 7321933
Alignment:
| Q |
500 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
599 |
Q |
| |
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||||||| ||||| ||||| |||| || |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
7321812 |
atgatttctgtgtggcagatttacagcttccaaacactccttcaggctatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctgg |
7321911 |
T |
|
| Q |
600 |
cttagtacctggaagcacaata |
621 |
Q |
| |
|
||| ||||| |||||||||||| |
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| T |
7321912 |
ctttgtacccggaagcacaata |
7321933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 7324576 - 7324682
Alignment:
| Q |
497 |
ctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctc |
596 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||| |||||||||| |||||||||||||| || |||| |||||||||| |||||||||| ||||| |
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| T |
7324576 |
ctgatgatttctgtgtagcagacttatcgtttccagacaccccttcgggctatccatgcaagtcggaaaacaatgtaacagctgatgattttgtattctc |
7324675 |
T |
|
| Q |
597 |
tggctta |
603 |
Q |
| |
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||||||| |
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| T |
7324676 |
tggctta |
7324682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 7318628 - 7318518
Alignment:
| Q |
497 |
ctgatgatttatgtgtagcagacttactact---accaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgtt |
593 |
Q |
| |
|
|||||||||| ||||||||| ||||| | || | || ||||||||||||||||||||||||||||||||| | |||||||| | ||||||| ||| |
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| T |
7318628 |
ctgatgatttctgtgtagcaaacttatttcttacatcagacaccccttcaggctatccatgcaaatcagaaaaatttgtaacagcggatgatttcatgta |
7318529 |
T |
|
| Q |
594 |
ctctggcttag |
604 |
Q |
| |
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|||| |||||| |
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| T |
7318528 |
ctctagcttag |
7318518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 32984137 - 32984186
Alignment:
| Q |
442 |
atgattcacactattcttttcttttttgttcttctctcatcatatacctc |
491 |
Q |
| |
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|||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
32984137 |
atgaatcacattattgttttcttttttgttctcctctcatcatatacctc |
32984186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 613
Target Start/End: Original strand, 32984274 - 32984314
Alignment:
| Q |
573 |
aacagtgaatgattttgtgttctctggcttagtacctggaa |
613 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
32984274 |
aacagtggatgattttgtgttctctggctttgtacctggaa |
32984314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 561
Target Start/End: Original strand, 32984243 - 32984271
Alignment:
| Q |
533 |
acaccccttcaggctatccatgcaaatca |
561 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32984243 |
acaccccttcaggctatccatgcaaatca |
32984271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 561
Target Start/End: Original strand, 6521346 - 6521374
Alignment:
| Q |
533 |
acaccccttcaggctatccatgcaaatca |
561 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
6521346 |
acaccccttcaggctatccatgcaaatca |
6521374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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