View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_11 (Length: 436)
Name: NF11621_high_11
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 37043327 - 37043740
Alignment:
| Q |
1 |
aaaagtgatcagtcaaatttttcgttagagattagtcatcggcaaacaagactaataaataatttgaaaagtatttagagctcatattcttcacatgctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37043327 |
aaaagtgatcagtcaaatttttcgttagagattagtcatcggcaagcaagactaataaataatttgaaaagtatttagagctcatattcttcacatgctt |
37043426 |
T |
|
| Q |
101 |
tcttattagtacaagagaattggaaagtatttacaatctaactatgatgccattttttgcagtttttaaaccaagcaaaacacaagaaacatagcgatat |
200 |
Q |
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| T |
37043427 |
gcttattagtacaagagaattggaaagtatttacaatctaactatgatgccattttttgcagtttttaaaccaagcaaaacacaagaaacatagcgatat |
37043526 |
T |
|
| Q |
201 |
acttgaacaatataggtcaaaagcagagtactatatatgttcatgtctcaacaaaaacatcaatggaaccaatgtggaaagaactccagctggattacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37043527 |
acttgaacaatataggtcaaaagcagagtactatatatgttcatgtctcaacaaaaacatcaatggaaccaatgtggaaagaactccagctggattacta |
37043626 |
T |
|
| Q |
301 |
tatgtcagacaatggaacaacatgcaacatgtttcaacagcatcatttttactcacaatctactctgactatctcaaaaacacaaatcaaaaactcacat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37043627 |
tatgtcagacaatggaacaacatgcaacatgtttcaacagcatcatttttactcacaatctactctgactatctcaaaaacaccaatcaaaaactcacat |
37043726 |
T |
|
| Q |
401 |
gtcatggaggcatt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
37043727 |
gtcatggaggcatt |
37043740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 175 - 375
Target Start/End: Complemental strand, 36269828 - 36269628
Alignment:
| Q |
175 |
gcaaaacacaagaaacatagcgatatacttgaacaatataggtcaaaagcagagtactatatatgttcatgtctcaacaaaaacatcaatggaaccaatg |
274 |
Q |
| |
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|||||||||||||| ||| ||| |||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
36269828 |
gcaaaacacaagaagcatgctgatttactagaacagtacaaatcaaaagcagagtactatatatgttcatgtctcaacaaaaacaatggcagcagcaatg |
36269729 |
T |
|
| Q |
275 |
tggaaagaactccagctggattactatatgtcagacaatggaacaacatgcaacatgtttcaacagcatcatttttactcacaatctactctgactatct |
374 |
Q |
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|||||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||| ||| |
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| T |
36269728 |
tggaaagaacaccagctggattactctatgtaagacagtggaacaacatgcaatatgtttcaacagcagcatttctactcacagtttactctgactttct |
36269629 |
T |
|
| Q |
375 |
c |
375 |
Q |
| |
|
| |
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|
| T |
36269628 |
c |
36269628 |
T |
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