View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_16 (Length: 406)
Name: NF11621_high_16
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 1481166 - 1480778
Alignment:
| Q |
1 |
acaaagtattgagtttagtacataggaacaactccaatggagctacattatcacatacttaatactccatagtacataacacatacaactcaagaaaggc |
100 |
Q |
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| T |
1481166 |
acaaagtattgagtttagtacataggaacaactccaatggagctacattatcacatacttaacactccgtagtacataacacatacaactcaagaaaggc |
1481067 |
T |
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| Q |
101 |
taaaagtcttttttcgcgagctttcttatactaaactcaagaaaggctaaaagtctgtttttcacgagctttcttatgctaaaatagaagcctcaataca |
200 |
Q |
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| T |
1481066 |
taaaagtcttttttcgcgagctttcttattctaaactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaataca |
1480967 |
T |
|
| Q |
201 |
caaacaaaattacaccatcaatctcctaaagctatcaagcatccaaacaatgatgaaagaaatagtagcgtttcattgttccatctttcaatgtcgtctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1480966 |
caaacaaaattacaccatcaatctcctaaagctatcaagcatccaaacaatgatgaaagaaatagtagcgtttcaatgttccatctttcaatgtcgtctt |
1480867 |
T |
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| Q |
301 |
caattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaatgaaaataaacct |
389 |
Q |
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| T |
1480866 |
caattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaatgaaaataaacct |
1480778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 43061473 - 43061410
Alignment:
| Q |
273 |
tcattgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg |
336 |
Q |
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| T |
43061473 |
tcattgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg |
43061410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 277 - 389
Target Start/End: Complemental strand, 19180694 - 19180582
Alignment:
| Q |
277 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19180694 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
19180595 |
T |
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| Q |
377 |
tgaaaataaacct |
389 |
Q |
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| T |
19180594 |
tgaaaataaacct |
19180582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 42801375 - 42801416
Alignment:
| Q |
348 |
atatttaagtgagtttggtggagtaaaaatgaaaataaacct |
389 |
Q |
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| T |
42801375 |
atatttaagtgagttgggtggagtaaaaatgaaaataaacct |
42801416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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