View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11621_high_18 (Length: 341)

Name: NF11621_high_18
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11621_high_18
NF11621_high_18
[»] chr2 (9 HSPs)
chr2 (11-341)||(17455867-17456197)
chr2 (61-195)||(17805267-17805401)
chr2 (230-288)||(2307359-2307417)
chr2 (285-339)||(2859363-2859417)
chr2 (285-339)||(45690503-45690557)
chr2 (230-274)||(7069460-7069504)
chr2 (313-341)||(8362403-8362431)
chr2 (230-274)||(8504124-8504168)
chr2 (230-274)||(43359369-43359413)
[»] chr1 (9 HSPs)
chr1 (48-170)||(775356-775479)
chr1 (285-339)||(49982460-49982514)
chr1 (230-274)||(49982553-49982597)
chr1 (285-339)||(36735516-36735571)
chr1 (293-339)||(23539946-23539992)
chr1 (230-274)||(17203014-17203058)
chr1 (230-274)||(34411046-34411090)
chr1 (230-274)||(39084806-39084850)
chr1 (230-274)||(46283039-46283083)
[»] chr4 (11 HSPs)
chr4 (51-195)||(52142584-52142729)
chr4 (298-339)||(4491217-4491258)
chr4 (298-339)||(4695669-4695710)
chr4 (248-289)||(19627871-19627912)
chr4 (313-341)||(9579666-9579694)
chr4 (313-341)||(9585361-9585389)
chr4 (230-274)||(17281870-17281914)
chr4 (230-274)||(17370372-17370416)
chr4 (313-341)||(18051776-18051804)
chr4 (230-274)||(48207344-48207388)
chr4 (230-274)||(54178686-54178730)
[»] scaffold0009 (1 HSPs)
scaffold0009 (293-339)||(214496-214542)
[»] chr8 (6 HSPs)
chr8 (285-338)||(12801454-12801507)
chr8 (285-339)||(30777276-30777330)
chr8 (229-274)||(37218866-37218911)
chr8 (230-274)||(11360265-11360309)
chr8 (230-274)||(36569757-36569801)
chr8 (230-274)||(44637017-44637061)
[»] chr7 (9 HSPs)
chr7 (285-338)||(27800033-27800086)
chr7 (230-274)||(2932672-2932716)
chr7 (285-339)||(2089211-2089265)
chr7 (293-339)||(29688928-29688974)
chr7 (299-339)||(8159642-8159682)
chr7 (230-274)||(11640560-11640604)
chr7 (230-274)||(22639462-22639506)
chr7 (230-274)||(42584027-42584071)
chr7 (295-339)||(43542138-43542182)
[»] chr3 (6 HSPs)
chr3 (298-341)||(11510719-11510762)
chr3 (229-274)||(29815393-29815438)
chr3 (298-339)||(52776453-52776494)
chr3 (313-341)||(4393523-4393551)
chr3 (230-274)||(4521365-4521409)
chr3 (313-341)||(24105152-24105180)
[»] chr6 (8 HSPs)
chr6 (293-339)||(1705962-1706008)
chr6 (293-339)||(14507977-14508023)
chr6 (293-339)||(19474028-19474074)
chr6 (298-339)||(10887813-10887854)
chr6 (230-274)||(926809-926853)
chr6 (230-274)||(6295645-6295689)
chr6 (230-274)||(6302455-6302499)
chr6 (230-274)||(14501291-14501335)
[»] chr5 (3 HSPs)
chr5 (230-274)||(2011151-2011195)
chr5 (313-341)||(19189484-19189512)
chr5 (230-274)||(29665916-29665960)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 17455867 - 17456197
Alignment:
Q  11 atgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455867 atgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacatt 17455966  T
Q  111 aacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagttgttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455967 aacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagttgttta 17456066  T
Q  211 taagggtactcttgcaacgttttttctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattatttatatagcaagagtaccggtgca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  17456067 taagggtactcttgcaacgttttttctcgtgcgatggtgttttctaaaatataagtattgacaaacaactaactatttatatagcaagagtaccggtgca 17456166  T
Q  311 gttcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||||    
T  17456167 gttcaatttatgaggtgtaccgtagaagtcc 17456197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 17805267 - 17805401
Alignment:
Q  61 gaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggta 160  Q
    |||||||||| ||| ||||||||||||| |||||||||||  || ||||| |||||||||  |||||||| ||||||||   ||||| || ||||||| |    
T  17805267 gaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaactactaagggaa 17805366  T
Q  161 ccagaaacatccatgtccaaatataggatttatct 195  Q
    ||||||||| |||||| || | |||||||||||||    
T  17805367 ccagaaacagccatgtacatagataggatttatct 17805401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 2307417 - 2307359
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattattt 288  Q
    |||||||| |||  ||| ||||||||||||||||| ||||||||| |||||| ||||||    
T  2307417 ttttttcttgtgaaatgatgttttctaaaatataaatattgacaaacaactatttattt 2307359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 2859417 - 2859363
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||| | ||||||||||||| ||  |||||||||||| ||||||||||||||    
T  2859417 atttatagaacaagagtaccggtacacctcaatttatgagatgtaccgtagaagt 2859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 45690557 - 45690503
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||| ||| ||||||||||| ||  ||||||| |||||||||||||||||||    
T  45690557 atttatagagcgagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 45690503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 7069460 - 7069504
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  7069460 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 7069504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 8362431 - 8362403
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  8362431 tcaatttatgaggtgtaccgtagaagtcc 8362403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 8504168 - 8504124
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  8504168 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 8504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 43359369 - 43359413
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  43359369 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 43359413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 775356 - 775479
Alignment:
Q  48 ttgattacctgtag-aagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgta 146  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  775356 ttgattacctataggaagtcatgacttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgta 775455  T
Q  147 agctgctaagggtaccagaaacat 170  Q
    ||||||||||||||||||||||||    
T  775456 agctgctaagggtaccagaaacat 775479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 49982514 - 49982460
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||||||| ||||| |||| ||  |||||||||||||||||||||||||||    
T  49982514 atttatatagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagt 49982460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 49982597 - 49982553
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| |||||||||    
T  49982597 ttttttctcatgagatggtgttttctaaaatataaatattgacaa 49982553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 36735571 - 36735516
Alignment:
Q  285 atttatatagcaag-agtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||| |||||| ||||||||| || | ||||||||||||||||||||||||||    
T  36735571 atttataaagcaaggagtaccggtacactccaatttatgaggtgtaccgtagaagt 36735516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 23539992 - 23539946
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  23539992 agcaagagtaccggtacacctcaatttctgaggtgtaccgtagaagt 23539946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 17203014 - 17203058
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17203014 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 17203058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 34411090 - 34411046
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  34411090 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 34411046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 39084850 - 39084806
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  39084850 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 39084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 46283039 - 46283083
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  46283039 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 46283083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 52142729 - 52142584
Alignment:
Q  51 attacctgtagaa-gtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagc 149  Q
    ||||||||||| | ||||||| |||||||||||||||||||| ||||||||  || ||||| |||||||||| |||||||| ||||||||||||||||||    
T  52142729 attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc 52142630  T
Q  150 tgctaagggtaccagaaacatccatgtccaaatataggatttatct 195  Q
    | ||||||| |||||||||| ||||||||||| |||||||||||||    
T  52142629 tactaagggaaccagaaacagccatgtccaaagataggatttatct 52142584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 4491217 - 4491258
Alignment:
Q  298 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  4491217 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 4491258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 4695669 - 4695710
Alignment:
Q  298 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  4695669 gagtaccggtgcacctcaatttatgaggtgtaccctagaagt 4695710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 19627871 - 19627912
Alignment:
Q  248 tgttttctaaaatataagtattgacaagcaactaattattta 289  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  19627871 tgttttctaaaatataaatattgacaaataactaattattta 19627912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 9579694 - 9579666
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  9579694 tcaatttatgaggtgtaccgtagaagtcc 9579666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 9585389 - 9585361
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  9585389 tcaatttatgaggtgtaccgtagaagtcc 9585361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 17281914 - 17281870
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17281914 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 17281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 17370416 - 17370372
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17370416 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 17370372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 18051804 - 18051776
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  18051804 tcaatttatgaggtgtaccgtagaagtcc 18051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 48207344 - 48207388
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  48207344 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 48207388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 54178686 - 54178730
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  54178686 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 54178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 214496 - 214542
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||    
T  214496 agcaggagtaccggtacaattcaatttatgaggtgtaccgtagaagt 214542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 12801454 - 12801507
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaag 338  Q
    ||||||| ||| ||||||||||| ||  ||||||||||||||||||||||||||    
T  12801454 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 12801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 30777330 - 30777276
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||| |||| ||||| |||| ||  |||||||||||||||||||||||||||    
T  30777330 atttataaagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagt 30777276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 37218866 - 37218911
Alignment:
Q  229 gttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    |||||||||| || |||| ||||||||||||||||| |||||||||    
T  37218866 gttttttctcatgagatgatgttttctaaaatataaatattgacaa 37218911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 11360309 - 11360265
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  11360309 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 11360265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 36569801 - 36569757
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  36569801 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 36569757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 44637061 - 44637017
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  44637061 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 44637017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 27800086 - 27800033
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaag 338  Q
    ||||||| ||| ||||||||||| ||  ||||||||||||||||||||||||||    
T  27800086 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 27800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 2932716 - 2932672
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    |||||||||||| |||||||||||||||||||||| || ||||||    
T  2932716 ttttttctcgtgagatggtgttttctaaaatataaataatgacaa 2932672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 2089211 - 2089265
Alignment:
Q  285 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||| ||||||||||||||| ||  ||| ||||| |||||||||||||||||    
T  2089211 atttataaagcaagagtaccggtacacctcattttattaggtgtaccgtagaagt 2089265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 29688974 - 29688928
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  29688974 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 29688928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 8159682 - 8159642
Alignment:
Q  299 agtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  8159682 agtaccggcacacttcaatttatgaggtgtaccgtagaagt 8159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 11640560 - 11640604
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  11640560 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 11640604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 22639506 - 22639462
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  22639506 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 22639462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 42584027 - 42584071
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||| ||||||||||||||||| |||||||||    
T  42584027 ttttttctcatgagatgatgttttctaaaatataaatattgacaa 42584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 43542138 - 43542182
Alignment:
Q  295 caagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||| || ||||  |||||||||||||||||||||||||||    
T  43542138 caagagtatcgatgcacctcaatttatgaggtgtaccgtagaagt 43542182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 11510762 - 11510719
Alignment:
Q  298 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||  ||||||||||||||||| |||||||||||    
T  11510762 gagtaccggtgcacctcaatttatgaggtgtatcgtagaagtcc 11510719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29815393 - 29815438
Alignment:
Q  229 gttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    |||||||||| || |||| ||||||||||||||||| |||||||||    
T  29815393 gttttttctcatgagatgatgttttctaaaatataaatattgacaa 29815438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 52776494 - 52776453
Alignment:
Q  298 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  52776494 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 52776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 4393523 - 4393551
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  4393523 tcaatttatgaggtgtaccgtagaagtcc 4393551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4521409 - 4521365
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  4521409 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 4521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 24105180 - 24105152
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  24105180 tcaatttatgaggtgtaccgtagaagtcc 24105152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 1705962 - 1706008
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  1705962 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 1706008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 14507977 - 14508023
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  14507977 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 14508023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 19474028 - 19474074
Alignment:
Q  293 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  19474028 agcaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 19474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 10887854 - 10887813
Alignment:
Q  298 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 339  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  10887854 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 10887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 926809 - 926853
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  926809 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 6295645 - 6295689
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  6295645 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 6295689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 6302455 - 6302499
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  6302455 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 6302499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 14501291 - 14501335
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  14501291 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 14501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 2011195 - 2011151
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  2011195 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 2011151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 19189484 - 19189512
Alignment:
Q  313 tcaatttatgaggtgtaccgtagaagtcc 341  Q
    |||||||||||||||||||||||||||||    
T  19189484 tcaatttatgaggtgtaccgtagaagtcc 19189512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 29665960 - 29665916
Alignment:
Q  230 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 274  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  29665960 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 29665916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University