View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_22 (Length: 292)
Name: NF11621_high_22
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 31942953 - 31943221
Alignment:
| Q |
19 |
atatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacctgctccatg |
118 |
Q |
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| T |
31942953 |
atatgaggcgttggccaaaagtgttgcaccaaattgttttcaggaactaaatggctattaccgttattcaccataattgattgaccgggccttctccatg |
31943052 |
T |
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| Q |
119 |
aattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattagaagaacttgccaatgtatt |
218 |
Q |
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| T |
31943053 |
aattaccaagttgtcctacttgatcgagcaagtgaatttgagataacaatgttgcattatccctcatagcaatcccattaaaagaacttgccaatgtact |
31943152 |
T |
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| Q |
219 |
aggagattggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctctgcttct |
287 |
Q |
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| T |
31943153 |
aggagattggtgatttcctctaatccttttgggtggacctctaccagaatccatggagtctatgcttct |
31943221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 31952151 - 31952414
Alignment:
| Q |
36 |
aaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacctgctccatgaattaccaagttgtcct |
135 |
Q |
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| T |
31952151 |
aaagtgttgcaccaaattgttttcaggaattaaatgattattttcattattcaccataagagaccgacctggtctactccatgaattaccaagttgttct |
31952250 |
T |
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| Q |
136 |
acttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattag------------aagaacttgccaatgtattaggag |
223 |
Q |
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| T |
31952251 |
acttgattgagcaaatgaatttgagatggcaatgttacattaccccccatagcaacctcgttagggggagaaatagaagaacttgccaatgtattaggag |
31952350 |
T |
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| Q |
224 |
attggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctctgcttct |
287 |
Q |
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| T |
31952351 |
attggtgatttcctctaattcttttgggtggacctctaccatcatccattgagtatatgcttct |
31952414 |
T |
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