View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_28 (Length: 249)
Name: NF11621_high_28
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27107130 - 27107368
Alignment:
| Q |
1 |
ctagacaatactgaaactgacagagactggtaaaaagttatgaaagcgattgaatgtaaccacatgtactggtgtcatgtcggtatccatatctacatga |
100 |
Q |
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| T |
27107130 |
ctagacaatactgaaactgacagacactggtaaaaagttatgaaagcgattgaatataaccacatgtactggtgtcatgtcggtatccatatctacatga |
27107229 |
T |
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| Q |
101 |
gtcagacaccagacatgtcttcaatatgaagtgttagtgacacatagattggtggtatttcgtaattatttcccacaaccacacacattccatgtacagc |
200 |
Q |
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| T |
27107230 |
gtcagacaccagacatgtcttcaatatgaagtgttagtgacacatagattggtggtatttcataattatttcccacaaccacacacattctatgtacagc |
27107329 |
T |
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| Q |
201 |
tcacaaaactcaaatgctcatgtatgttatttttctgtg |
239 |
Q |
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| T |
27107330 |
tcacaaaactcaaatgctcatgtatgttacttttctgtg |
27107368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 27106880 - 27107064
Alignment:
| Q |
5 |
acaatactgaaactgacagagact--ggtaaaaagttatgaaagcgattgaatgtaaccacatgtactggtgtcatgtcggtatccatatctacatgagt |
102 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| | ||||||| |||| |||||| ||||||| |||||||||||||||||| ||||| |
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| T |
27106880 |
acaatactgaaactgacacagacaccggtaaaaagttatgaaaactattgaatataactgcatgtattggtgtcgcgtcggtatccatatctacgtgagt |
27106979 |
T |
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| Q |
103 |
cagacaccagacatgtcttcaatatgaagtgttagtgacacatagattggtggtatttcgtaattatttcccacaaccacacaca |
187 |
Q |
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| T |
27106980 |
cggacaccagacacgtcttcaatatgaagtgttagtgatacatagattggtggtatttcgtaattattttccacacacacacaca |
27107064 |
T |
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