View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11621_high_30 (Length: 246)

Name: NF11621_high_30
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11621_high_30
NF11621_high_30
[»] chr8 (3 HSPs)
chr8 (11-246)||(258386-258606)
chr8 (11-246)||(657315-657535)
chr8 (11-246)||(843050-843270)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 258386 - 258606
Alignment:
Q  11 cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga 110  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  258386 cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga 258480  T
Q  111 ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||     
T  258481 ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc 258570  T
Q  211 atgtgtagatcctatgatttactcttgaattttgtc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  258571 atgtgtagatcctatgatttactcttgaattttgtc 258606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 657535 - 657315
Alignment:
Q  11 cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga 110  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  657535 cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga 657441  T
Q  111 ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||     
T  657440 ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc 657351  T
Q  211 atgtgtagatcctatgatttactcttgaattttgtc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  657350 atgtgtagatcctatgatttactcttgaattttgtc 657315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 843270 - 843050
Alignment:
Q  11 cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga 110  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  843270 cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga 843176  T
Q  111 ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||     
T  843175 ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc 843086  T
Q  211 atgtgtagatcctatgatttactcttgaattttgtc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  843085 atgtgtagatcctatgatttactcttgaattttgtc 843050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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