View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_31 (Length: 241)
Name: NF11621_high_31
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 53539459 - 53539681
Alignment:
| Q |
1 |
attctcatatctcaggtaaagtctgcaatatttaatagaaattcggttttttcctccaatttgtcatatgccatggccaacacaatgtatatctaagata |
100 |
Q |
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| T |
53539459 |
attctcatatctcaggtaaagtctgcaatatttaatagaaattcggttgtttcctccaatttgtcatatgccatggccaacacaatgtatatctaagata |
53539558 |
T |
|
| Q |
101 |
tgacatctgttttagaagcatactcaatggaattttaaccaatccgcaggtatctcagaaaatgcttcctaacaagaggcgaaaagtgcagagtggaatg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53539559 |
tgacatctgttttagaagcatacttaatggaattttaaccaatccgcatgtatctcagaaaatgcttcctaacaagaggcagaaagtgcagagtggaatg |
53539658 |
T |
|
| Q |
201 |
aaccctttgtccgatattactaa |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
53539659 |
aaccctttgtccgacattactaa |
53539681 |
T |
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