View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_6 (Length: 487)
Name: NF11621_high_6
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 41691188 - 41690741
Alignment:
| Q |
1 |
ggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagnnnnnnngcggttaactacggg |
100 |
Q |
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| T |
41691188 |
ggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagaaaaaaagcggttaactacggg |
41691089 |
T |
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| Q |
101 |
tatgagaagataattctaccaaaagttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcacttttaattgtaaattgt |
200 |
Q |
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| T |
41691088 |
tatg---------------------ttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcacttttaattgtaaattgt |
41691010 |
T |
|
| Q |
201 |
ccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctnnnnnnnctaatttaaccttaggccttgtttg |
300 |
Q |
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| T |
41691009 |
ccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctaaaaaaactaatttaaccttaggccttgtttg |
41690910 |
T |
|
| Q |
301 |
tataaatggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttaaagtaagttgttttcataagcaatctga |
400 |
Q |
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| T |
41690909 |
tataaatggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttcaagtaagttgttttcataagcaatctga |
41690810 |
T |
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| Q |
401 |
agaatttaaggaaataagttgaaaactggttatgaacaagtctttcaaaagctcttctttgtccaattt |
469 |
Q |
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| T |
41690809 |
agaatttaaggaaataagtggaaaactggttatgaacaagtctttcaaaagctcttctttgtccaattt |
41690741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 19538897 - 19538960
Alignment:
| Q |
7 |
agattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatc |
70 |
Q |
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| T |
19538897 |
agattcttgggttggaaacgtgtgctgatattttggtgggagatgaaatgagaaggggcatatc |
19538960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 19538039 - 19537978
Alignment:
| Q |
8 |
gattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatat |
69 |
Q |
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| T |
19538039 |
gattcttgggctggaaatgtgtgctgatattttggtgggagatgagaagagaaggggtatat |
19537978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 35394561 - 35394502
Alignment:
| Q |
381 |
tgttttcataagcaatct-gaagaatttaaggaaataagttgaaaactggttatgaacaa |
439 |
Q |
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| T |
35394561 |
tgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaa |
35394502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 35535009 - 35534969
Alignment:
| Q |
326 |
ggttatcatatacgtgtttatatataggctatttctataat |
366 |
Q |
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| T |
35535009 |
ggttatcatataagtgcttatatataagctatttctataat |
35534969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 39967922 - 39967986
Alignment:
| Q |
376 |
taagttgttttcataagcaatctga-agaatttaaggaaataagttgaaaactggttatgaacaa |
439 |
Q |
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|||||||||||||||||| |||||| |||| | | | ||||||||||||||| | |||||||||| |
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| T |
39967922 |
taagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaa |
39967986 |
T |
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