View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_high_9 (Length: 456)
Name: NF11621_high_9
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 21 - 443
Target Start/End: Complemental strand, 2886547 - 2886125
Alignment:
| Q |
21 |
aaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaactagttcaaacac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2886547 |
aaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaactagttcaaacac |
2886448 |
T |
|
| Q |
121 |
ataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtagtgccatttgttgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2886447 |
ataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgtggtaattcaacttcttgggtagtgccatttgttgt |
2886348 |
T |
|
| Q |
221 |
gctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatgaaatgtgtgcataagcataagaaac |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
2886347 |
gctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtttatgaaatgtgcgcataagcataagaaac |
2886248 |
T |
|
| Q |
321 |
ttaaataacaataaacgaaggtactcacgatcaaggtaagtgagagccacagtgaataatatgttgaaaagaaacacaaatcctgttaacgctccaatcc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
2886247 |
ttaaataacaataaacgaaggtactcacgatcaaggtaagtgagagccacagtgaataatatgttgaaaagaaacataaatcctgttaatgctccaatcc |
2886148 |
T |
|
| Q |
421 |
ctatccaataccaatgtgcctct |
443 |
Q |
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| T |
2886147 |
ctatccaataccaatatgcctct |
2886125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 130 - 443
Target Start/End: Original strand, 2897983 - 2898295
Alignment:
| Q |
130 |
gcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtagtgccatttgttgtgctgtcttc |
229 |
Q |
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|||||||||||||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
2897983 |
gcatgtttatattgagttttcatgaatggtatgaaaaagattcataacctatgcgcggtaattcaacttcttggagagtgccatttgttatgctgtcttc |
2898082 |
T |
|
| Q |
230 |
tgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatgaaatgtgtgcataagcataagaaacttaaataac |
329 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||||| ||||||||||||||||| | |
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| T |
2898083 |
tgattcttcatttatttttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtcaatggcatatttgcataaccataagaaacttaaatacc |
2898182 |
T |
|
| Q |
330 |
aataaacgaaggtactcacgatcaaggtaagtgagagccacagtgaataatatgttgaaaagaaacacaaatcctgttaacgctccaatccctatccaat |
429 |
Q |
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|| ||| ||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
2898183 |
aa-aaatgaatgtactcacgattaaggtgagtgagagccatagtgaataatatgttgaaaagaaacataaatcctgttaatgctccaatccctatccaat |
2898281 |
T |
|
| Q |
430 |
accaatgtgcctct |
443 |
Q |
| |
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|||||| ||||||| |
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| T |
2898282 |
accaatatgcctct |
2898295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 2876192 - 2876099
Alignment:
| Q |
342 |
tactcacgatcaaggtaagtgagagccacagtgaataatatgttgaaaagaaacacaaatcctgttaacgctccaatccctatccaataccaat |
435 |
Q |
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|||||||||||||||||||||||||| | | || |||| | |||| ||| || | ||||||| |||| || |||| |||||||||||||||| |
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| T |
2876192 |
tactcacgatcaaggtaagtgagagcgataatgtataaaaagttggtaaggaaaataaatcctattaatgcaccaactcctatccaataccaat |
2876099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 2876307 - 2876267
Alignment:
| Q |
229 |
ctgattcttcatttattgttgcttgtggcttgtcaaatgct |
269 |
Q |
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|||||||||| |||||||| |||||||||||||||| |||| |
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| T |
2876307 |
ctgattcttcttttattgtggcttgtggcttgtcaagtgct |
2876267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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