View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_11 (Length: 448)
Name: NF11621_low_11
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 41 - 448
Target Start/End: Complemental strand, 34583245 - 34582815
Alignment:
| Q |
41 |
tcatcaatatatccacatctaagcttcaatctttaaaagtcacatattccatggtgggtttaaaacacattcat----ggtgttcactgcaccccattta |
136 |
Q |
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| T |
34583245 |
tcatcaatatatccacatctaagctcaaatctttaaaagtcacatattccatggtgggtttaaaacacattcattcatggtgttcattgcaccccattta |
34583146 |
T |
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| Q |
137 |
ttataacaattaagctaagaggttatcacgccaaaattaactatgcttacaagtcaaatcctcatatcaccatagacactatgcttacacagagaggcca |
236 |
Q |
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| T |
34583145 |
t-ataacaattaagctaagaggttatcacgccaaaattaactatgcttacaagtcaactcctcatatcaccatagacactatgcttacatagagaggcca |
34583047 |
T |
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| Q |
237 |
ctgttttggagtggactttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtatatactattctaaacctct |
336 |
Q |
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| T |
34583046 |
ctgtttcggagtggactttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtatatactattctaaacctct |
34582947 |
T |
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| Q |
337 |
cacccgtgacccacc----------gattaacttgagaattaaagtgtaggtcggtgggaccatgatttttcctaaatca----------tatgaaggta |
416 |
Q |
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| T |
34582946 |
cacctgtgacccacctcaaacattagattaagttgagaattaaagtgtaggtcggtgggaccatgatttttcctaaatcacataatcacttatgaaggta |
34582847 |
T |
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| Q |
417 |
tgaataattagagaagtatacaatttggcaag |
448 |
Q |
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| T |
34582846 |
tgaataattagagaagtatacaatttggcaag |
34582815 |
T |
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