View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_16 (Length: 413)
Name: NF11621_low_16
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 36467777 - 36467382
Alignment:
| Q |
1 |
atttcaattgagattcgaatattaattcactaagaccatacggaagcaccatctctctcttcattttgaatctcatttaaaaaatcttaataaaattgat |
100 |
Q |
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| T |
36467777 |
atttcaattgagattcgaatattagttcactaagatcatatggaagcaccatctctctcttcattttgggtctcatttaataaatcttaataaaattgat |
36467678 |
T |
|
| Q |
101 |
acttattaagtatgtggtgatatgaattcaatttaaacatctaatttaaggtgattgttgtggatggtctaaaatgtgaaagtggtgactcattcctcta |
200 |
Q |
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| T |
36467677 |
acttattaagtatgtgatgatatgaattcaatttaaacatctaatttagggtgcttgttgtggatggtctaagatgtgaaagtggtgactcattcctcta |
36467578 |
T |
|
| Q |
201 |
tgccaatccccattgtttaatttgagtcatttatttgtatagagacaatatttattgagacaaggcataaagacaaaacatttattgagatttcttcttt |
300 |
Q |
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| T |
36467577 |
tgccaatccccattgtttaatttgagtcatttatttgtatagagacaatatttattgagacaaggcatagagacaaaacatttattgagatttcttcttt |
36467478 |
T |
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| Q |
301 |
tcttactcgaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatct |
396 |
Q |
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| T |
36467477 |
tcttactcaaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatct |
36467382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 36477179 - 36477108
Alignment:
| Q |
298 |
ttttcttactcgaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcat |
371 |
Q |
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| T |
36477179 |
ttttcttactc--aatatttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcat |
36477108 |
T |
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