View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_18 (Length: 402)
Name: NF11621_low_18
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 9072218 - 9071844
Alignment:
| Q |
18 |
catttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtactagagaaaagtccttgtgaatcatatttctctttaaccttcaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072218 |
catttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactagagaaaagtccttgtgaatcatatttctctttaaccttcaa |
9072119 |
T |
|
| Q |
118 |
aaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072118 |
aaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatt |
9072019 |
T |
|
| Q |
218 |
tgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072018 |
tgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttc |
9071919 |
T |
|
| Q |
318 |
ctaggtaagcactagaagctgtaacataacgcattagaattccattgtattgctctattccacataacccctttg |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071918 |
ctaggtaagcactagaagctgtaacataacgcattagaattccattgtattgctctattccacataacccctttg |
9071844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 98 - 299
Target Start/End: Complemental strand, 9059423 - 9059221
Alignment:
| Q |
98 |
tatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttc-aaatgccacatttctattcttaccccaatgaggtaaccct |
196 |
Q |
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| T |
9059423 |
tatttctcattaaccttcaaaaattgccccacatttttatacttcttgaaaactccttcgaaatgccaaattcctattcttcccccaatgaggcaaccct |
9059324 |
T |
|
| Q |
197 |
ccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagt |
296 |
Q |
| |
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||||| || ||||| || ||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||||| |
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| T |
9059323 |
ccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctttgctacggtaatacgtgaattcaaagt |
9059224 |
T |
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| Q |
297 |
cta |
299 |
Q |
| |
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||| |
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|
| T |
9059223 |
cta |
9059221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 9059477 - 9059422
Alignment:
| Q |
18 |
catttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtacta |
76 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |||||| ||||| |||||| |
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|
| T |
9059477 |
catttttcaatattgtcacac---cttttaatccaagcatttgatccgtccaagtacta |
9059422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 166 - 366
Target Start/End: Original strand, 490387 - 490587
Alignment:
| Q |
166 |
atttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattgga |
265 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| | ||| |||||||| |||||||||| || ||||||||||||||||||| || |||| |
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| T |
490387 |
atttctattttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatgga |
490486 |
T |
|
| Q |
266 |
tctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgt |
365 |
Q |
| |
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||||| || || |||||| |||| ||||| || | ||||| ||| ||||| | ||| |||||||||| ||||||||||||||| || |||||||||| |
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| T |
490487 |
tctttactgcggtaatatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgt |
490586 |
T |
|
| Q |
366 |
a |
366 |
Q |
| |
|
| |
|
|
| T |
490587 |
a |
490587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 490247 - 490341
Alignment:
| Q |
26 |
aatattgtcacaccttcttttattccaagcacttgatctgtccatgtactagagaaaagtccttgtgaatcatatttctctttaaccttcaaaaa |
120 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| |||||||| |||||||||||||| | | |||||||||| ||||||||||||||| |
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| T |
490247 |
aatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagagaaaagtctcttcgggtcatatttctttttaaccttcaaaaa |
490341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 384
Target Start/End: Complemental strand, 10813180 - 10812934
Alignment:
| Q |
137 |
tacttcttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| ||||||||||| || | ||||||||| || | | | ||||||||||||||||||| | || |
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| T |
10813180 |
tacttcttgaaaactccttcaaatgcaaggttcctatgattaccccaatgtggcagccctccatattttata-tcccaatttgttcaatctctttcaaaa |
10813082 |
T |
|
| Q |
237 |
tgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagc |
336 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||| ||||||| || |||||| || |||| | |||||| |||| ||||||| | ||||| |
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| T |
10813081 |
tgtcttcataaagtctaggagccattagatctttgccacggtaatatgcgaaatcaaattccctagcatttttttggttccctaagtaagcattggaagc |
10812982 |
T |
|
| Q |
337 |
tgtaacataacgcattagaattccattgtattgctctattccacataa |
384 |
Q |
| |
|
|| |||||| |||||||| || || ||| ||| || ||||||||||| |
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| T |
10812981 |
ggtgacataatgcattagagtttcaatgttttgttcaattccacataa |
10812934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 355
Target Start/End: Original strand, 10811580 - 10811722
Alignment:
| Q |
213 |
caatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagtctaatgcatcctcttg |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||| | || ||| ||||| |
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|
| T |
10811580 |
caatttgttcaatctcttcaaaaatgtcttcataaagtctaggagccattagatctttgctacgataatatgcgagatcaaactttacaacattttcttg |
10811679 |
T |
|
| Q |
313 |
gtttcctaggtaagcactagaagctgtaacataacgcattaga |
355 |
Q |
| |
|
||| |||| ||||||| | ||||| || |||| | |||||||| |
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|
| T |
10811680 |
gttccctaagtaagcattggaagcggtgacattatgcattaga |
10811722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 367
Target Start/End: Complemental strand, 49016507 - 49016168
Alignment:
| Q |
26 |
aatattgtcacaccttcttttattccaagcacttgatctgtccatgtactagagaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttct |
125 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| | |||||| |||||||||||| ||| |||||||||| | ||||||||||||||||| || |
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| T |
49016507 |
aatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttac |
49016408 |
T |
|
| Q |
126 |
caatatctttgtacttcttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaat |
225 |
Q |
| |
|
| | || ||||| || |||| ||||| | | |||||||| || |||||||| |||||||||||||| ||||| | ||||||||||| || |
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|
| T |
49016407 |
ctgctttcttatacttacggattgctcccacaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctat |
49016308 |
T |
|
| Q |
226 |
ctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaa |
325 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || ||||||||| ||||| ||||||||||| || || || | |||| ||| |||||| | ||| |
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|
| T |
49016307 |
ctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtat |
49016210 |
T |
|
| Q |
326 |
gcactagaagctgtaacataacgcattagaattccattgtat |
367 |
Q |
| |
|
|||||||||| |||||| || ||||| || |||||||||||| |
|
|
| T |
49016209 |
gcactagaagttgtaacgtagcgcataaggattccattgtat |
49016168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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