View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_20 (Length: 337)
Name: NF11621_low_20
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 52011885 - 52012196
Alignment:
| Q |
11 |
catcatcactgtcactgataacgatggtggtgttgttgttatcatcaatgagtggtttcttgccttttgggtcnnnnnnnttgtagagttttaagcgctt |
110 |
Q |
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| T |
52011885 |
catcatcactgtcactgataacgatggtgttgttgttgttatcatcaatgagtggtttcttgccttttgggtcaaaaaaattgtagagttttaagcgctt |
52011984 |
T |
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| Q |
111 |
agaagaagaagaagatgcatacgattcatgaggtaatggatccatgtaaaaagaatcagtnnnnnnnnnnnnnnnnnnnnnnccttcaattcctctcttg |
210 |
Q |
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| T |
52011985 |
agaagaagacgaagatgcatacgattcatgaggtaatggatccatgtaaaaagaatcagtatcatcatcatcatcatcatcaccttcaattcctctcttg |
52012084 |
T |
|
| Q |
211 |
aggaagggttcatgaatgggagaatcaagagaaaatggaacattnnnnnnnnnnnnnnnnngggttaagtttaagattataccaatttctttgtcggaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52012085 |
aggaagggttcatgaatgggagaatcaagagaaaatggaacatttgatgatgatgatgatggggttaagtttaagattataccaatttctttgtcggaaa |
52012184 |
T |
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| Q |
311 |
aaccgtgaccct |
322 |
Q |
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|||||||||||| |
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| T |
52012185 |
aaccgtgaccct |
52012196 |
T |
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Back To:
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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 25623747 - 25623806
Alignment:
| Q |
194 |
cttcaattcctctcttgaggaagggttcatgaatgggagaatcaagagaaaatggaacat |
253 |
Q |
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| T |
25623747 |
cttcaattcctctcttgagaaagggttcatgaataggagattcaagagaaaaaggaacat |
25623806 |
T |
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